Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00521 ATGTTGACTCCTAAGGTGGTGGATCGGGATTTAAAATTTGATGTAGAGATAAGTGGTTCTAGTGAGAGAAACACAAAAAATAAGATGAATGAGGATAGACAAATGGAGCTACACTACCTCGATGGCGGCGGCTTCCCTTACACAGTTACTGAGAGTTTCATGGATTTCTTTGAAGGGCTTCACCAACATCAAGTGCCTGCTTATGCCAATGCCGTGCCATTGATCGATCAGGGGAATGCATATTGGTCAATGAATATGCAATGTTACAAATTTGGAGTATCCGATCACGGGAACACGTATTACGACCCTTTGGAGGAAAGTCGACATTTGCCTCCTTCGGTTGATGTTGGTGAAAGGGAATGGGAGTATCCTTCGACGGTGAATGTCGATGTTCCTGAACCGACATATGCACCATCGGTCGAGGAGGATGTTGTAGATACTCATTCTATGCCAGAAGAATGTGATATAAGTCATCAGGAGGAGACCAGTACTTCTCAAGCTATATGGCAAGACGAGATTGATCCTGACCACATGACCTATGAGGAACTGTTGGACTTGGGTGAATCGGTTGGAACCGAAAGTCGGGGTCTTTCCGAAGAACAAATAAGCTTGCTTCCGACTGCACGATGCAAGTTAACGAGCTTTTTCTCGAGAAAAAAGCCAGATGAAAGATGTGTGATCTGCCAAATGAGGTACAAGAGAGGGGAGAAGCAAATAAAATTACCTTGCAAGCATTTTTACCACAACAAATGCATAACCAAATGGCTGACCATCAACAAAATTTGTCCAATCTGCAACATCGAGGTGTTCGGAGACGAAAGCACGGATGCGTCGGGCGGGCAGTGA 846 44.68 MLTPKVVDRDLKFDVEISGSSERNTKNKMNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLIDQGNAYWSMNMQCYKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTHSMPEECDISHQEETSTSQAIWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPTARCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIEVFGDESTDASGGQ 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3260280 3265354 - CmoCh08G005210.1 Cmo08g00521 387254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00521 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 29 275 - -
Cmo08g00521 281 Pfam Ring finger domain 224 266 IPR001841 -
Cmo08g00521 281 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 29 275 IPR033276 GO:0004842|GO:0016567|GO:0046621
Cmo08g00521 281 SUPERFAMILY RING/U-box 220 270 - -
Cmo08g00521 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 270 IPR013083 -
Cmo08g00521 281 SMART ring_2 225 265 IPR001841 -
Cmo08g00521 281 ProSiteProfiles Zinc finger RING-type profile. 225 266 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00293 Cmo-Chr4:1460308 Cmo08g00521 Cmo-Chr8:3260280 1.27E-29 dispersed
Cmo04g01329 Cmo-Chr4:6766592 Cmo08g00521 Cmo-Chr8:3260280 2.03E-29 dispersed
Cmo08g00521 Cmo-Chr8:3260280 Cmo11g00849 Cmo-Chr11:4321647 3.10E-59 dispersed
Cmo02g01281 Cmo-Chr2:7632604 Cmo08g00521 Cmo-Chr8:3260280 1.61E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00521 K19045 - csv:101210160 476.092