Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00548 ATGGAGCTTGGCTTGAGCTTAGGCGACACTCCCAAACCCTTCCGTTTCGTCGACAAGCAACGGCAACCTCAGCGCGGCCTTTCCCGTCCAGATTTAGGGTTCTGCGTCGACTTATCGATCGGCCGTACTATCGCCGGAGATAAAGAAGGCGACGAAGAAAAACCTAATCAGAGAGAAGAGGAATCCGATGGCAATGAAGATCCACCGATCCAACTCGACCTTCTCCCTCGCAATCCTGTTCAACGGAACCTAACGAATCCTTACCAAGGATTTCCATGGCCGTCGTCCGAAAACGACGAAGTTGAAGACCGATCCGCATCGCCGAATAGCGTAGCGTCGTCGTTTCAAATGGAATTTGGATTGTACGGCGGCGGAGGGAACATTTCTTCACGGATAGATCAAATGAAAAATAGCGTTGTAAACGAAGTAGGTGAATCTGAGCGAGCGTCTTCACGAGCGAGCGATGAAGACGAAAATGGCTCCACGAGGAAGAAACTCAGATTGTCGAAAGACCAATCCGCTTACCTCGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCAAAACAAAAACTGGCGCTGGCTAAGCAACTGAATCTTCGTCCGCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGACAAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAACGATGCTGCGAGACATTAACAGATGAGAACAGACGGCTACAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAGACCACTAACTCATTCTACATGCAATTACCAGCCACCACACTCACCATGTGCCCATCATGTGAAAGAGTGACCTCCACCGTCGCCACAGCCACCGCCGGCGGAGGAAAACTACCTGGTTTCGCCATTTCTGGTGGAGCAAGCTCCTCTTTCCCATTTTCTGCAAAATCACAGACCCACCAGTCAACAACTTCATGA 954 49.06 MELGLSLGDTPKPFRFVDKQRQPQRGLSRPDLGFCVDLSIGRTIAGDKEGDEEKPNQREEESDGNEDPPIQLDLLPRNPVQRNLTNPYQGFPWPSSENDEVEDRSASPNSVASSFQMEFGLYGGGGNISSRIDQMKNSVVNEVGESERASSRASDEDENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTVATATAGGGKLPGFAISGGASSSFPFSAKSQTHQSTTS 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3379157 3381091 - CmoCh08G005480.1 Cmo08g00548 387281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00548 317 MobiDBLite consensus disorder prediction 44 65 - -
Cmo08g00548 317 SMART HOX_1 161 223 IPR001356 GO:0003677
Cmo08g00548 317 MobiDBLite consensus disorder prediction 78 93 - -
Cmo08g00548 317 Coils Coil 232 255 - -
Cmo08g00548 317 MobiDBLite consensus disorder prediction 141 168 - -
Cmo08g00548 317 PANTHER - 1 290 - -
Cmo08g00548 317 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 290 - -
Cmo08g00548 317 MobiDBLite consensus disorder prediction 1 109 - -
Cmo08g00548 317 Gene3D - 169 215 - -
Cmo08g00548 317 Pfam Homeodomain 163 217 IPR001356 GO:0003677
Cmo08g00548 317 ProSitePatterns 'Homeobox' domain signature. 194 217 IPR017970 GO:0000981|GO:0006355
Cmo08g00548 317 SMART halz 219 262 IPR003106 GO:0006355|GO:0043565
Cmo08g00548 317 Pfam Homeobox associated leucine zipper 219 253 IPR003106 GO:0006355|GO:0043565
Cmo08g00548 317 SUPERFAMILY Homeodomain-like 155 220 IPR009057 -
Cmo08g00548 317 ProSiteProfiles 'Homeobox' domain profile. 159 219 IPR001356 GO:0003677
Cmo08g00548 317 MobiDBLite consensus disorder prediction 148 168 - -
Cmo08g00548 317 CDD homeodomain 163 220 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00907 Cmo-Chr4:4562273 Cmo08g00548 Cmo-Chr8:3379157 8.10E-75 dispersed
Cmo07g00624 Cmo-Chr7:2812539 Cmo08g00548 Cmo-Chr8:3379157 4.09E-76 dispersed
Cmo08g00548 Cmo-Chr8:3379157 Cmo14g00412 Cmo-Chr14:1958755 2.27E-98 dispersed
Cmo01g00217 Cmo-Chr1:961002 Cmo08g00548 Cmo-Chr8:3379157 6.32E-67 wgd
Cmo17g00902 Cmo-Chr17:8159676 Cmo08g00548 Cmo-Chr8:3379157 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10244 PF00046 Homeodomain 1.80E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00548 K09338 - csv:101221600 498.434