Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00562 ATGGGGACTCCGGTGAATATCATTGTCGGATCACATGTTTGGGTTGAGGATCCTGAGGATGCTTGGATTGATGGTCAAGTTACAGATATTAGTGGAAAAAATGCCACCATAATCACCTCCATGGATAAAACTATTGTTGCGCCAATTTCGAGTGTATATCCGAAAGACACGGAGGCGCCGCCGGCTGGGGTTGACGACATGACGAAATTGGCATACCTCCATGAACCTGGAGTTTTGCATAATCTAGCATGTCGATTTTCTCTCAACGAGATATACACTTACACCGGGAATATTCTAATCGCCGTGAATCCTTTCCGGAGATTGCCGCATTTGTATGATATTCACATGATGGAGCAGTACAAAGGAGCTACATTCGGCGAGCTTAGTCCTCATCTTTTCGCAGTTGCAGATGCTTGCTATAGATCGATGATTAACGAGCAAGGAAGTCAGTCCATCTTAGTAAGTGGAGAGAGTGGTGCTGGTAAAACTGAGACAACGAAGATGCTCATGAGATATCTAGCGTTCATGGGAGGCAGATCAGATACAGAAGGAAGAACAGTCGAGCAGCAGGTTTTGGAGTCCAACCCTGTGTTGGAAGCATTTGGAAATGCCAAGACCGTCAAAAACAACAATTCGAGTCGTTTTGGAAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGGGCTGCCATTCGTACGTACCTTCTCGAACGGTCGCGTGTTTGCCAAGTCTCGGATCCTGAGAGAAACTACCATTGTTTTTACATGCTTTGTGCAGCACCACCAGAAGATGTCAAGAAATACAAGTTAGCAGACCCAAGGACATATCGTTATCTTAATCAAACAAATTGTTACGAAGTGGCGAATGTTGATGATTCAAGAGAGTACTTGGAGACGAGAAACGCCATGGATGTTGTAGGAATCAGCCAGGATGAACAGGATGCTATATTTCGTGTTGTAGCTGCAATACTGCATCTTGGAAACATTGAATTCATGAAAGGGAAGGAATTTGACTCCTCCAAAGTGAAAGACGAGAAATCAAACTATCATCTTCAAACAGCAGCAGAGCTACTCATGTGTGATGTGAAGGCATTGGAACATTCACTCTGTCAGCGTGTCATAGTGACTCCTGATGGGAAAATTACAAAGCCATTGGACCCAGATTCAGCAGCCTTGAGTCGTGATGCATTGGCAAAAACTGTGTATTCAAGGCTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGCCAAGATCCTAATGCAGCGAGCTTAATTGGTGTGCTTGATATTTATGGATTTGAAAGCTTCAAGGTCAATAGTTTTGAGCAGCTTTGCATCAACCTGACCAATGAGAAGTTGCAGCAACATTTTAATCAGCATGTTTTCAAGATGGAGCAAGAGGAGTACACGAAAGAAGAAATTAACTGGAGCTATGTTGAGTTTGTGGATAATCAGGATGTCCTTGATCTCATTGAGAAGAAACCTGGAGGTATCATTGCCCTGCTTGATGAAGCCTGCATGTTTCCAAAGTCGACACATGAAACATTTGCTCAAAAGATGTATCAGACGTACAAAGGACATAAGCGGTTCAGCAAGCCAAAACTTGCTCGAACAAACTTCACAATAAACCATTATGCTGGAGATGTTACATACCAAGCAGACCTATTTCTAGATAAAAACAAGGACTATGTAGTAGCAGAACATCAGGCTCTTCTGAATGCCTCACAATGCTCTTTTGTTGCAAATCTTTTCCCTCCACTTCCTCAGGAGAGCTCAAAGCAATCTAAGTTTTCCTCTATTGGTACTCGGTTCAAGCAACAACTCCAAGCTCTCATGGAAACATTGAATACTACAGAACCACATTATATCAGATGTGTGAAGCCCAACACAGTCTTGAAGCCTGGAATCTTTGAAAACTTCAATGTGTTGAACCAATTGAGATGTGGGGGAGTTCTCGAGGCAATTAGAATTAGCTGTGCAGGATATCCAACGAAAAGAACATTTGATGAGTTCCTTGATCGTTTTGGAATGCTTACTCCAGATATTTCAGACGGGACTGATGAAAAATCAGCATGCATGGCAATATGCGACAGAATGGGCTTAAAGGGTTATCAGATTGGAAAAACAAAAGTGTTTCTGAGAGCTGGACAAATGGCTGAGTTGGATGCACGACGAACTGAAATATTGGCCAATGCTGTCAGACGCATCCAGCGGCAAATTCGAACCCTTCTAACTAGGAAAGAGTTTCTCACCATGAGGAGAGCTACAATTCATATGCAGAAACATTGGAGAGCGCAACTTGCTCGTAAGCTGTATGAGAAAATGAGGAGAGAAGCTGCTTCAATCCGTATACAGAAGCATGCACGTGCTCATGCAGACAGAAAAGCTTACACAAAATTACTTGCGTCAGCTATAGTTATTCAAACTGGTATGCGAGCAATGGCCGCTAGAAATGAGTTCAGACACAGAAGAAGAACAAAGGCAGCTATTATTGTTCAGACTGAATGGCGAAGGGCATCAGCTATTTCAGCTTACAAACAGCAGCAGAAGGCAACTCTTGCCCTTCAATGCCTCTGGCGAGCTAAAGTTGCAAGGAAAGAGCTTAAAAAACTAAAGATGGCTGCAAGAGAAACAGGGGCACTCAAGGAGGCCAAGGACAAATTGGAGAAGCGTGTCGAGGAGCTAACGTGGCGCCTGGAATTTGAGAAGCACCTGAGGATGGATGTTGAAGAAGCCAAGGGGCAAGAAGTTGCAAAGTTACAAAGTGCTTTGGAAGAAATGCAAGGACAGCTGGATGAAGCCAATGCTGCAATCATACGTGAGAGAGAAGAAGCAAAATTGGCCATAGAACAAGCTCCACCGGTCATTAAGGAAGTGCCCGTGGTTGATGAGACCAAGCTGGAAATGCTGAGAAATCACAATGAAGAACTTGAGGGGGTGGTTGGAGAGCTGAAGAAGAAACTTGAGGAATTCGAAGAAAAGTTTGCTGAAGTAGAAAAGGAAAGTAAAGCTACACTCAAGGAGGCAGAAGAGGCACAATTGAAATCAATGCAGCTTCAGGAGACTATTGAGAGATTGGAATCAAATTTATCTAGCCTCGAGTCCGAGAACCAGGTTCTACGTCAGCAGGCTTTGGTTGCTGCAGACAATGAATCCCTCTCTGATGAACTGCAAGCCCTCAAGAGTAAGATCGGAAGTCTCGAGGCGGAGAATGAAGTTCTTCGCAACCGGACAGTAGTTGTTGAGCATGTGTCTATTCCTGCAGGGGTGCTTGCAGAAAGCAAGCCTTTGGATAACGGGCAGCCTTTAGATAACGGGCAGCCTTTAGATAACGGGCATATTGTGGAAGAAGAGATTAAAGCAACTACGGAGATTAAAGCAACTAAGGAACCACCTGTTGTTCCCGTCCTAGCTAAGCAAGGCTCGCTCACAGAAAAGCAACAGGAAAATCATGATGTCCTGCTCAAGTGCTTAGCAGAAGACAAACGTTTTGACAAAGGCAGACCAGTTGCAGCTTGTATTGTCTACAAGACACTTCTTCAATGGAGATCTTTTGAAGCAGATAAGACCAATATATTCGACAGAATTATTCACACAATCAGATCTTCTATAGAGAGTCAAGAAAATATCAGTGACCTTGCATATTGGCTTTCAACCACTTCTACCCTTTTCTATCTTCTTCAAAGTTCACTCAAGGCAGCCAATACAAGTACTGCAGCTTCACATCGCAACCGTACTTCCCCTTCAACCTTATTTGGTCGTATGGCATATGGTCTTCGATCATCTTCAATGGGTATGGGAATTTCCAGTGGATACAGTGGAATGGTGGGAAAGACAAACAATCAATCTAAAGTTGAAGCCAAGTACCCAGCATTGCTTTTTAAGCAACATTTGGCAGCATGCATTGAAAAATTGTTTGGGATGATACGTGATAACTTGAAGAAAGAAATTAGCCCTTTCTTGCATCTATGCATACAGGCACCAAGATCAGTGAGGGCCAGATCAATAAGAGGGTCATCTAAAAATATCCATTCAAATATTGTTGCAAAACAACAAGCATCAAGTATTCACTGGCAAAGCATTGTTAATAATCTAGACCAGACCTTGGATATAATGTCTGAAAATCATGTTCCCTCCATGATCATGAGAAAAATCTTCCTTCAGGTTTTCTCATTCATAAATGTCCAGCTCTTCAATAGCTTGTTACTACGACGTGAGTGCTGTTCCTTCAGTAATGGAGAGTACTTAAAGTTAGGTCTGCAGGAGTTGGAGCAATGGTGTACTAAAGCTACTGATACGTATGCTGGCTCTTCCTGGAATGAACTTCAACACATAAGACAGGCAGTAGGATTTCTGGTGTTACACCAGAAGTCCCAGAAAAGTTTGAATGAGATAACAGATGAATTGTGCCCGATTCTGAGCATCCCGCAAATATATCGCATAGGAACGATGTTCTGGGACGACAAATATGGAACTCAGGGGTTATCTCCTGATATAATTGGAAGAATGAGAGTCCTATTAGCAGAAGACTCCATCAACATCCCAAACAACTCTTTCCTGCTTGATGTGGATTCAAGCATACCATTTTCAATAGAAGAAGTATTCCGGTCCTTCGGCGAGGTTAACCTGTCCGATATCGACCCGCCGCCGCTCATAAGACAAAGATCTGATTTCCATTTTCTACTGCAGCAAGAAAGAGATGGCCAAACCTTTGCGTTCTGGGCAAAATTTTGA 4749 42.83 MGTPVNIIVGSHVWVEDPEDAWIDGQVTDISGKNATIITSMDKTIVAPISSVYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGATFGELSPHLFAVADACYRSMINEQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLADPRTYRYLNQTNCYEVANVDDSREYLETRNAMDVVGISQDEQDAIFRVVAAILHLGNIEFMKGKEFDSSKVKDEKSNYHLQTAAELLMCDVKALEHSLCQRVIVTPDGKITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKVNSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTNFTINHYAGDVTYQADLFLDKNKDYVVAEHQALLNASQCSFVANLFPPLPQESSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLTPDISDGTDEKSACMAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRRIQRQIRTLLTRKEFLTMRRATIHMQKHWRAQLARKLYEKMRREAASIRIQKHARAHADRKAYTKLLASAIVIQTGMRAMAARNEFRHRRRTKAAIIVQTEWRRASAISAYKQQQKATLALQCLWRAKVARKELKKLKMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRMDVEEAKGQEVAKLQSALEEMQGQLDEANAAIIREREEAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEGVVGELKKKLEEFEEKFAEVEKESKATLKEAEEAQLKSMQLQETIERLESNLSSLESENQVLRQQALVAADNESLSDELQALKSKIGSLEAENEVLRNRTVVVEHVSIPAGVLAESKPLDNGQPLDNGQPLDNGHIVEEEIKATTEIKATKEPPVVPVLAKQGSLTEKQQENHDVLLKCLAEDKRFDKGRPVAACIVYKTLLQWRSFEADKTNIFDRIIHTIRSSIESQENISDLAYWLSTTSTLFYLLQSSLKAANTSTAASHRNRTSPSTLFGRMAYGLRSSSMGMGISSGYSGMVGKTNNQSKVEAKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVRARSIRGSSKNIHSNIVAKQQASSIHWQSIVNNLDQTLDIMSENHVPSMIMRKIFLQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCTKATDTYAGSSWNELQHIRQAVGFLVLHQKSQKSLNEITDELCPILSIPQIYRIGTMFWDDKYGTQGLSPDIIGRMRVLLAEDSINIPNNSFLLDVDSSIPFSIEEVFRSFGEVNLSDIDPPPLIRQRSDFHFLLQQERDGQTFAFWAKF 1582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3441423 3451755 - CmoCh08G005620.1 Cmo08g00562 387295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00562 1582 Coils Coil 876 910 - -
Cmo08g00562 1582 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cmo08g00562 1582 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Cmo08g00562 1582 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo08g00562 1582 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo08g00562 1582 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo08g00562 1582 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo08g00562 1582 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo08g00562 1582 ProSiteProfiles IQ motif profile. 853 882 IPR000048 GO:0005515
Cmo08g00562 1582 SMART iq_5 781 803 IPR000048 GO:0005515
Cmo08g00562 1582 SMART iq_5 756 778 IPR000048 GO:0005515
Cmo08g00562 1582 SMART iq_5 804 826 IPR000048 GO:0005515
Cmo08g00562 1582 SMART iq_5 852 874 IPR000048 GO:0005515
Cmo08g00562 1582 SMART iq_5 829 851 IPR000048 GO:0005515
Cmo08g00562 1582 SMART iq_5 733 755 IPR000048 GO:0005515
Cmo08g00562 1582 Pfam Myosin head (motor domain) 64 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo08g00562 1582 PANTHER MYOSIN 19 1565 - -
Cmo08g00562 1582 Gene3D - 667 729 - -
Cmo08g00562 1582 Gene3D - 439 623 - -
Cmo08g00562 1582 Coils Coil 972 1048 - -
Cmo08g00562 1582 SMART DIL_2 1389 1496 IPR002710 -
Cmo08g00562 1582 Coils Coil 1055 1082 - -
Cmo08g00562 1582 CDD MYSc_Myo11 76 719 IPR036018 -
Cmo08g00562 1582 Gene3D Kinesin motor domain 65 662 IPR036961 -
Cmo08g00562 1582 ProSiteProfiles Dilute domain profile. 1199 1514 IPR002710 -
Cmo08g00562 1582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 785 IPR027417 -
Cmo08g00562 1582 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
Cmo08g00562 1582 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Cmo08g00562 1582 Pfam DIL domain 1390 1493 IPR002710 -
Cmo08g00562 1582 Pfam IQ calmodulin-binding motif 758 777 IPR000048 GO:0005515
Cmo08g00562 1582 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515
Cmo08g00562 1582 ProSiteProfiles IQ motif profile. 782 808 IPR000048 GO:0005515
Cmo08g00562 1582 SMART MYSc_2a 56 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo08g00562 1582 CDD MyosinXI_CBD 1150 1537 IPR037975 GO:0007015
Cmo08g00562 1582 Gene3D - 832 881 - -
Cmo08g00562 1582 Gene3D - 784 831 - -
Cmo08g00562 1582 Gene3D - 733 783 - -
Cmo08g00562 1582 Gene3D - 252 310 - -
Cmo08g00562 1582 Coils Coil 922 956 - -
Cmo08g00562 1582 ProSiteProfiles IQ motif profile. 734 761 IPR000048 GO:0005515
Cmo08g00562 1582 PANTHER MYOSIN-12 19 1565 - -
Cmo08g00562 1582 ProSiteProfiles Myosin motor domain profile. 62 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo08g00562 1582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 882 IPR027417 -
Cmo08g00562 1582 Pfam Myosin N-terminal SH3-like domain 9 48 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00562 Cmo17g00888 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00562 Cmo-Chr8:3441423 Cmo12g01162 Cmo-Chr12:10512698 0 dispersed
Cmo17g00888 Cmo-Chr17:8068228 Cmo08g00562 Cmo-Chr8:3441423 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00562 K10357 - csv:101207221 2821.57