Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00564 ATGGCCGCTGAAATTAACCAAACAAAGGAATTCATTTTCCGTTCAAAGCTTCCCGATATTCGCATTCCCAATCATCTTCCACTCCATGAATATATTTTTCAAAACCTCCCCAATTACGCCTCCCGCCCCTGTTTGATTAACGGCGCCACCGGCCACGTATACTCATACGACGACGTTCAGTTAACAGCCCGTCGTGTCGCCAGTGGACTTCACAATCTCGGGATTAAGAAGGGTGATGTCGTTATGAATTTACTTCCCAACTCGCCGGAATTTGTTTTCACGTTTCTTGGAGCGTCGTATCGCGGCGCTATTATGACGGCGGCGAATCCGTTTTACACGGCGGTGGAAATTGCCAAACAGGCGAAAGCTGCTAATGCGAAATTGATTGTCACCATGGCATGCTTTTATGATCGGGTTAAGGATTTGGCTGAAAATGGTGTCAAAATTGTGTGTGTTGATTATGCTGTTGAGGGTTGTTTGCATTACTCTGTTTTGAGTGGTGCGGATGAATCCCATTTGCCGTTTGTGGATTTCGCCGCCGATGATGTGGTGGCGCTGCCGTATTCCTCCGGCACTACCGGTTTACCAAAGGGTGTTATGTTGACTCATAAAGGTTTGATCACGAGCGTTGCTCAACAAATCGACGGCCAAAATCCGAATCTGTATTACAAACGCAACGACGTTATCCTCTGTGTTTTGCCGTTTTTTCACATCTATTCACTCAATTCGATTTTGCTGTGTGGATTACGCGCCGGTGCTGCGATTTTGATAATGCAAAAATTCGAAATCGTTTCGCTTTTGGAATTAGTTGAGAAATATAAAGCTTCAATCATGCCGATTGTGCCGCCGATTCTTTTAGCCATTGCTAAGTCGTCGGAATTTGAGAAATACGACATGTCGTCAGTGAGGGTATTGAAATCCGGTGGAGCACCGTTGGGGAAAAAATTGGAAGACACCGTGAGGGAGAAGTTTCCAACGGCGATTCTCGGGCAAGGATATGGAATGACCGAAGCCGGTCCGGTTCTGACCATGAGTTTAGCGTTTGCGAAAGAACCGTTTCCAGTGAAAGCCGGCGCTTGTGGGACGGTGGTTCGAAATGCAGAGATGAAGATTATTGATCCAGAAACCGGCGTTTCGTTGCCGGCGAATTCCGCCGGCGAGATTTGTATCAGAGGGGATCAAATCATGAAGGGATACTTAAACGATTTGGAGTCTACGAAGAGGACTATTGACAAAGAAGGATGGCTTCACACCGGCGACATTGGGTTCATCGACGACGACGACGAGCTCTTCATCGTCGACCGGCTTAAAGAACTAATAAAATTCAAGACGTTTCAGGTGGCGCCGGCGGAGCTGGAGGCTCTTCTAATCGCTCATCCCAAACTATCCGATGCAGCGGTGATTGGTATGCCGGACGAGCAAGCCGGAGAATTGCCGGTGGCGTTTGTGGTGAAGGCGAACGGCGGCGAAATCACAGAAGAAGACGTAAAGCAATTCATATCAGAACAAGTGGTGTTCTACAAAAGGCTAAAACGAGTGTTTTTCGTCAACGCTATTCCAAAAGCTCCGTCGGGCAAAATCCTCCGGAAAGAACTCCGATCACAATTGGCCGCCGGTGTTTACAATTAA 1629 47.51 MAAEINQTKEFIFRSKLPDIRIPNHLPLHEYIFQNLPNYASRPCLINGATGHVYSYDDVQLTARRVASGLHNLGIKKGDVVMNLLPNSPEFVFTFLGASYRGAIMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDYAVEGCLHYSVLSGADESHLPFVDFAADDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQIDGQNPNLYYKRNDVILCVLPFFHIYSLNSILLCGLRAGAAILIMQKFEIVSLLELVEKYKASIMPIVPPILLAIAKSSEFEKYDMSSVRVLKSGGAPLGKKLEDTVREKFPTAILGQGYGMTEAGPVLTMSLAFAKEPFPVKAGACGTVVRNAEMKIIDPETGVSLPANSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDIGFIDDDDELFIVDRLKELIKFKTFQVAPAELEALLIAHPKLSDAAVIGMPDEQAGELPVAFVVKANGGEITEEDVKQFISEQVVFYKRLKRVFFVNAIPKAPSGKILRKELRSQLAAGVYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3456378 3458358 - CmoCh08G005640.1 Cmo08g00564 387297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00564 542 Pfam AMP-binding enzyme 38 442 IPR000873 -
Cmo08g00564 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - -
Cmo08g00564 542 SUPERFAMILY Acetyl-CoA synthetase-like 12 538 - -
Cmo08g00564 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Cmo08g00564 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Cmo08g00564 542 Gene3D - 437 539 IPR045851 -
Cmo08g00564 542 Gene3D - 5 436 IPR042099 -
Cmo08g00564 542 CDD 4CL 22 532 - -
Cmo08g00564 542 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00564 Cmo-Chr8:3456378 Cmo11g00395 Cmo-Chr11:1967164 0 dispersed
Cmo08g00564 Cmo-Chr8:3456378 Cmo08g00565 Cmo-Chr8:3461332 0 tandem
Cmo01g00207 Cmo-Chr1:931413 Cmo08g00564 Cmo-Chr8:3456378 0 wgd
Cmo14g01057 Cmo-Chr14:5785268 Cmo08g00564 Cmo-Chr8:3456378 0 wgd
Cmo17g00887 Cmo-Chr17:8062887 Cmo08g00564 Cmo-Chr8:3456378 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00564 K01904 - csv:101218361 967.222