Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00565 ATGGCCGCTGAATTAAACCAAACAAACGAGTTCATTTTCCGATCAAAGCTTCCCGATATTCACATTCCCAATCATCTTCCACTCCATCACTACGTTTTTCAAAACCAGTCCAAATTCGGCTCCCGCCCCTGTTTGATTAACGGCGCCACCGGCGATGTTTACTCATACCACGACGTTCAGTTAACAGCCCGTCGTGTCGCCAGTGGACTTCACAATCTCGGGATTAAGAAGGGTGATGTCGTTATGAATTTACTTCCCAACTCGCCGGAATTTGTTTTCACGTTTCTCGGAGCGTCGTATCGCGGTGCTATTATGACGGCGGCGAATCCGTTTTACACGGCGGTGGAAATTGCCAAACAGGCGAAAGCTGCTAATGTGAAATTGATTGTCACCATGGCTTGCTTTTATGATCGGGTTAAGGATTTGGCTGAAAATGGTGTCAAAATTGTGTGTGTTGATTATGCTGTTGAGGATTGTTTGCATTACTCTGTTTTGAGTGGCGCGGATGAATCCCATTTGCCGTTTGTGGATTTCGCCGCCGATGATGTGGTGGCGCTGCCGTATTCCTCCGGCACCACCGGTTTACCAAAGGGTGTTATGTTGACTCATAAAGGGTTGATCACAAGCGTTGCTCAACAAATCGACGGCGAAAATCCGAATCTGTATTATCATGGTGGTGATGTTATCCTCTGTGTTTTGCCGTTTTTTCATATCTATTCACTCAATTCGATTTTGCTGTGTGGATTACGCGCCGGCGCTGCGATTTTGATAATGCAAAAATTCGAAATCGTTTCGTTTTTGCAATTAGTTGAGAAATATAAAGTGTCGATCATGCCGATCGTGCCGCCAATTTTTTTAGCCATTGCTAAATCGCCGGATTTGGAGAAATACGACGTGTCGTCCGTGAGGGTATTGAAATCCGGTGGAGCGCCGCTGGGGAAAGAATTGGAAGACGCTGTGAGGGAGAAGTTTCCAGCGGCGATTCTCGGGCAAGGATATGGAATGACCGAGGCCGGTCCGGTTCTAACCATGAGTTTAGCGTTTGCGAAAGAACCGTTTCCGGTGAAAGCCGGCGCCTGTGGGACGGTGGTTCGAAATGCAGAGATGAAGATTGTTGATCCGGAAACCGGCGCGTCGTTGCCGGCGAATTCCGCCGGAGAGATTTGTATTAGAGGGGATCAGATCATGAAGGGATACTTAAACGATTTGGAGTCTACGAAGAGGACTGTTGATAAAGAAGGATGGCTTCACACCGGTGACATTGGGTTCATCGACAACGACGACGAGCTCTTCATCGTCGACCGGCTTAAGGAACTGATAAAATTCAAGGCGTTTCAGGTGGCGCCGGCGGAGCTGGAGGCTCTTCTGATCACTCACCCCAAACTTTCCGATGCGGCTGTGATTGGTATGCCGGACGAGCAGGCCGGAGAAGTGCCGGTGGCGTTTGTGGTGAAGGCGAACGGCGGCGCGATCACGGAAGAAGATGTAAAGCAGTTCATATCAAAACAAGTGGTGTTCTACAAAAGGCTAAAACGAGTGTTTTTCGTGAACGCGATTCCAAAGGCTCCGTCGGGTAAAATCCTTAGAAAAGAGCTCAGAGCCAAACTGGCTAATGGTGCTTATGATTAA 1629 48.37 MAAELNQTNEFIFRSKLPDIHIPNHLPLHHYVFQNQSKFGSRPCLINGATGDVYSYHDVQLTARRVASGLHNLGIKKGDVVMNLLPNSPEFVFTFLGASYRGAIMTAANPFYTAVEIAKQAKAANVKLIVTMACFYDRVKDLAENGVKIVCVDYAVEDCLHYSVLSGADESHLPFVDFAADDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQIDGENPNLYYHGGDVILCVLPFFHIYSLNSILLCGLRAGAAILIMQKFEIVSFLQLVEKYKVSIMPIVPPIFLAIAKSPDLEKYDVSSVRVLKSGGAPLGKELEDAVREKFPAAILGQGYGMTEAGPVLTMSLAFAKEPFPVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLESTKRTVDKEGWLHTGDIGFIDNDDELFIVDRLKELIKFKAFQVAPAELEALLITHPKLSDAAVIGMPDEQAGEVPVAFVVKANGGAITEEDVKQFISKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKLANGAYD 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3461332 3463127 - CmoCh08G005650.1 Cmo08g00565 387298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00565 542 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 537 - -
Cmo08g00565 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Cmo08g00565 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - -
Cmo08g00565 542 SUPERFAMILY Acetyl-CoA synthetase-like 10 539 - -
Cmo08g00565 542 Pfam AMP-binding enzyme 35 442 IPR000873 -
Cmo08g00565 542 Gene3D - 4 436 IPR042099 -
Cmo08g00565 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Cmo08g00565 542 CDD 4CL 22 532 - -
Cmo08g00565 542 Gene3D - 437 539 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00207 Cmo-Chr1:931413 Cmo08g00565 Cmo-Chr8:3461332 0 dispersed
Cmo02g00478 Cmo-Chr2:2613807 Cmo08g00565 Cmo-Chr8:3461332 0 dispersed
Cmo08g00565 Cmo-Chr8:3461332 Cmo17g00887 Cmo-Chr17:8062887 0 dispersed
Cmo18g00635 Cmo-Chr18:8064232 Cmo08g00565 Cmo-Chr8:3461332 4.02E-141 dispersed
Cmo08g00564 Cmo-Chr8:3456378 Cmo08g00565 Cmo-Chr8:3461332 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00565 K01904 - csv:101218121 991.104