Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00572 ATGGAGACTACAAGATCCCTGCATCCCCTTCTTCTTCTTCCTCTTCTTTTCGTCCTCGTTGACGCTCGTTCGAGCTCGATCGACGCCGTTAGTGCCTTTCACCAGACGCTTGTTCTTAATGGGCAGAAACTTCCATTGATGGATATGAAAATACCCGCAACTGAGTGCATCTTTCACAACCCAAGAGTGGAGAAGGAAACAGCGACCTTTGAAATGAAAGAAAGAGACTACTGTTCAGGCAATATAAAAGACCGGGACAAGAATCTCCAAGACCGCCTAGTCCTCGACCAAATTCACGTCGACTCCCTGCTATCCCGATTCAAATACTCCACTTCCCTCTTCACCCCCCACGACATCTCCGACACCCACCTCCCCTTAACCCTCGGCACCAGCCTCCAAACCCTCAACTACCTCGTCACCGTCCGCATCGGCCCTCAAAACCTAACCCTCATCGTCGACACCGGCAGCGACCTCACCTGGGTCCAATGCCTCCCTTGCCACCTCTGTTACAACCAACAACAACCCCTCTTCGATCCCTCAAACTCCCCTTCATTTCTCTCCCTCCCCTGTAACTCCAGCAACTGTTCTGCTTTCCAACCCACAGCTGGAGGCTCCGGCGCTTGTACCAACGGCAGTTCAAATCCCTGCGATTACGAGGTTAACTACGGCGACGGCTCTTACTCCCGTGGAGACCTCGGATTTGAAACCCTGAACCTGGGGAATGTTTCCGTTGAGAATTTTATATTTGGGTGTGGCCGGAATAACAAGGGCTTGTTCGGTGGAACCTCCGGATTAATGGGTTTTGGTAGAAGCGAACTCTCCGTTGTTTCTCAAACTTCCTCTGCTTACGGCGGCGTTTTTTCCTACTGTTTGCCGTCGACTGAAACCGGTTCTTCAGGTTCTTTAACAATGGGGACTGGAGATTTCTCAAATTTCCGAAACATTTCCCCAATTTCCTACACGAAAATGGTTCCAAATCCACAGATGTCGAATTTCTACACACTGAATCTGACCGGAATTACCGTTGGTGGGTTGAAATTAGTGGTGCCGCGTTTGGCTCCGAGTAAGGGAGTTTTGAGCTTACTCGATTCAGGGACGGTGATTACCAGGTTGCCTCCGTCGGTATACCAAGCTTTGAAGGAGGAATTTGTGAGGCAATTTTCTGGGTATCCAACGGCGGCTGGATACTCGCTGTTGGACACGTGTTATAATCTTAGTGGGTTGAAAGAAGTGAAAACTCCGAATGTGAAGCTTCATTTTGAAGGCGAGGGAGAGATGAGTGTGGATGTTGGGGGGCTTTTTTACTATGTGAAATCTGATGGGTCTCAGATTTGTTTGGCGTTTGCGAGTTTGGCGGATGAAGATCAGATTGGGATTATTGGGAGTTATCAGCAGAAGAATCAGAGGGTTATTTATAATTTGAAGGAATCCAAGAGCAAGGCTCTCAAGCGCACGCGTAAGTCCGTTCGTCGTGATGCTCCCGCTCAGCGTAGTTCTGTATACCGCGGCGTCACCAGGCATAGATGGACGGGACGGTATGAGGCGCACCTGTGGGATAAGAATTCTTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGAGCGTACGATGATGAAGAAGCGGCGGCTCATGCTTACGACCTTGCAGCGCTCAAGTACTGGGGAGCAGAAACTGTTATTAACTTTCCACGATTAACATACCAAGACGAGCTTAAAGAAATGGAAGGCCAATCAAGAGAAGAGTATATTAGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGTGTTTCAAAGTACAGAGCTACGCAAGAAGAAGCTGCTAGAGCTTACGACCTGGCGGCAATAGAACATCGTGGCCTTAACGCCGTTACAAATTTCGATATCAGCCGTTACATCAAATGTCTCCGTCCAGGGGAACAGCATATCCCAGACAATAACCGTCCATCAAGTCCAAACGCCGGCGACACTGCCTCAGAATTTGACCCCAAATCCTTTCTCGAAATTACCTTTCCGTCGCAATCTTCGAGCTCCGACCAACCAACCACCGCGCCGGAACCTCACGGCGGCCTCCCCTCATCATCGTCGGCGACGTTGGAGCTGCTAATCCATTCGTCAAAATTCAAACACATACTAGAAAGGACATCCGCCGCTGAGACTCCACAGACGCTGCCGGAATCCGTCCGGCCGCGCCGCTGTATACCGGACGACATTCAAACCTACTTCGATTGTAGTACTCAAGATTCTGACGACATTGCCGGAAGCGACGACGGAATTTTCGGGGTCCGGGCTACACACTTGGCGAGTGTTTGTGATTTGGTTAGCTGGAAATTGAAAGTCTTGCCGGTATACCAGCTCAACTCCTCCAGGAAAATTGATTATAAGCTATATTCTCCTTTTAGGCCAATTGATCCTCCAAAAGAGAAACTTGATTCACCAAAAGCATTAAAGCAAAACATTGTTAATCATCAAAAGAGAAACTCTAAGTCAAGAGAATTTACAAATACATTAGAGTTGCATCGATGTTTGGAAAGTCAGGGCATTGCAAGGAAGGTTGTTCAGAGATTGAACAGCAAAAGAGCTGAGAAGCAGCCAAGGATTATCATACTGAGCAACAAAGCTTTGAATCTATGGAAGCCAGGCATATGCAAAATGCTTGGTAACCTGTCAATGGATACCTGCCAAAACACAAAACACCCCATAATTCTTATCAACATCCCACAAGTCTACGAGCTAAGACAAGTCGATAGACCTTTTAGATAG 2763 47.96 METTRSLHPLLLLPLLFVLVDARSSSIDAVSAFHQTLVLNGQKLPLMDMKIPATECIFHNPRVEKETATFEMKERDYCSGNIKDRDKNLQDRLVLDQIHVDSLLSRFKYSTSLFTPHDISDTHLPLTLGTSLQTLNYLVTVRIGPQNLTLIVDTGSDLTWVQCLPCHLCYNQQQPLFDPSNSPSFLSLPCNSSNCSAFQPTAGGSGACTNGSSNPCDYEVNYGDGSYSRGDLGFETLNLGNVSVENFIFGCGRNNKGLFGGTSGLMGFGRSELSVVSQTSSAYGGVFSYCLPSTETGSSGSLTMGTGDFSNFRNISPISYTKMVPNPQMSNFYTLNLTGITVGGLKLVVPRLAPSKGVLSLLDSGTVITRLPPSVYQALKEEFVRQFSGYPTAAGYSLLDTCYNLSGLKEVKTPNVKLHFEGEGEMSVDVGGLFYYVKSDGSQICLAFASLADEDQIGIIGSYQQKNQRVIYNLKESKSKALKRTRKSVRRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQGAYDDEEAAAHAYDLAALKYWGAETVINFPRLTYQDELKEMEGQSREEYIRYLRRKSSGFSRGVSKYRATQEEAARAYDLAAIEHRGLNAVTNFDISRYIKCLRPGEQHIPDNNRPSSPNAGDTASEFDPKSFLEITFPSQSSSSDQPTTAPEPHGGLPSSSSATLELLIHSSKFKHILERTSAAETPQTLPESVRPRRCIPDDIQTYFDCSTQDSDDIAGSDDGIFGVRATHLASVCDLVSWKLKVLPVYQLNSSRKIDYKLYSPFRPIDPPKEKLDSPKALKQNIVNHQKRNSKSREFTNTLELHRCLESQGIARKVVQRLNSKRAEKQPRIIILSNKALNLWKPGICKMLGNLSMDTCQNTKHPIILINIPQVYELRQVDRPFR 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3507877 3517101 + CmoCh08G005720.1 Cmo08g00572 387305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00572 920 PANTHER ASPARTYL PROTEASES 12 478 IPR001461 GO:0004190|GO:0006508
Cmo08g00572 920 MobiDBLite consensus disorder prediction 644 658 - -
Cmo08g00572 920 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 150 161 IPR001969 GO:0004190|GO:0006508
Cmo08g00572 920 PANTHER - 12 478 - -
Cmo08g00572 920 Pfam AP2 domain 499 555 IPR001471 GO:0003700|GO:0006355
Cmo08g00572 920 Pfam Xylanase inhibitor C-terminal 333 477 IPR032799 -
Cmo08g00572 920 Pfam Xylanase inhibitor N-terminal 137 305 IPR032861 -
Cmo08g00572 920 SUPERFAMILY DNA-binding domain 499 564 IPR016177 GO:0003677
Cmo08g00572 920 Gene3D AP2/ERF domain 500 564 IPR036955 GO:0003700|GO:0006355
Cmo08g00572 920 Gene3D AP2/ERF domain 581 630 IPR036955 GO:0003700|GO:0006355
Cmo08g00572 920 CDD cnd41_like 136 472 IPR033873 -
Cmo08g00572 920 MobiDBLite consensus disorder prediction 639 659 - -
Cmo08g00572 920 ProSiteProfiles Peptidase family A1 domain profile. 137 483 IPR033121 -
Cmo08g00572 920 SMART rav1_2 500 569 IPR001471 GO:0003700|GO:0006355
Cmo08g00572 920 SMART rav1_2 584 634 IPR001471 GO:0003700|GO:0006355
Cmo08g00572 920 Gene3D Acid Proteases 310 485 IPR021109 -
Cmo08g00572 920 Gene3D Acid Proteases 115 305 IPR021109 -
Cmo08g00572 920 PRINTS Ethylene responsive element binding protein signature 501 512 IPR001471 GO:0003700|GO:0006355
Cmo08g00572 920 PRINTS Ethylene responsive element binding protein signature 610 630 IPR001471 GO:0003700|GO:0006355
Cmo08g00572 920 SUPERFAMILY Acid proteases 131 477 IPR021109 -
Cmo08g00572 920 SUPERFAMILY DNA-binding domain 602 630 IPR016177 GO:0003677
Cmo08g00572 920 ProSiteProfiles AP2/ERF domain profile. 500 563 IPR001471 GO:0003700|GO:0006355
Cmo08g00572 920 ProSiteProfiles AP2/ERF domain profile. 552 628 IPR001471 GO:0003700|GO:0006355
Cmo08g00572 920 MobiDBLite consensus disorder prediction 671 695 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00572 Cmo-Chr8:3507877 Cmo10g00480 Cmo-Chr10:2144602 6.77E-06 dispersed
Cmo09g00393 Cmo-Chr9:1730747 Cmo08g00572 Cmo-Chr8:3507877 2.92E-80 transposed
Cmo17g00882 Cmo-Chr17:8027300 Cmo08g00572 Cmo-Chr8:3507877 0 transposed
Cmo17g00881 Cmo-Chr17:8019784 Cmo08g00572 Cmo-Chr8:3507877 1.10E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10246 PF14543 TAXi_N 1.40E-49 CL0129 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00572 - - csv:101217013 610.142