Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00579 ATGGGGATATATCTGAGCTCCCCCAAAACAGAAAAGGCCTCGGATGATGGTGAGAACGAAAGGCTTCGGTACGGCCTTTCCTCAATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTGTCTAGATTTGGACACATCAACATCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAAGCAGTTTCTAAGTTCTGTGCCAAGTACCTTCACCGACAGGTGCTCAAGCACGAATCATACATGGCTGGAGATGTGGGAACTTCATTACAGAAGTCCTTTCTCAGAATGGATGAGATGATGCTTGGACAGAGGGGATGGAGAGAGTTAGCTGTTTTGGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGAGTAGCGAAGCTAACAACCAAGTGGACGATTGGCCTGCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATTCGAAATAACCAGCTTGTGGTAGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGCCAGGCATATAATCTATCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCTGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCACGAGCTATAGGAGACATGGAATTTAAGCAGAACAAAAGTATGCCTGCAGAAAAGCAGATTGTAACAGCCAACCCAGATGTAACAACTGTTGAGCTTTGTGAGGATGACGAGTTTCTTGTAATTGCCTGTGATGGGATCTGGGATTGCATGTCTAGCCAACAACTGGTCGACTACATTGGAGATCAACTAAAAACAGAAAGCAAACTCTCAGTTATTTGCGAGAGAGTATTTGACAGATGTTTGGCACCTTCAGCTGGTGGTGAAGGATGTGACAACATGACCATGATCTTGGTTCAGTTTAAGAAACCCTTCAACCCAAATGCTGCTTCTGCTGAGGAGCTGCCTTCATCGTCCAATCAACTTAGATCTGATGATCCAAACGAAGGCTCTTCTAAAACCGAATAG 1089 45.55 MGIYLSSPKTEKASDDGENERLRYGLSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKHESYMAGDVGTSLQKSFLRMDEMMLGQRGWRELAVLGDKMDKISGMIEGFIWSPKSSEANNQVDDWPAEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKTESKLSVICERVFDRCLAPSAGGEGCDNMTMILVQFKKPFNPNAASAEELPSSSNQLRSDDPNEGSSKTE 362
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 3546049 3550909 + CmoCh08G005790.1 Cmo08g00579 387312
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00579 362 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Cmo08g00579 362 PANTHER PROTEIN PHOSPHATASE 2C 1 341 IPR015655 GO:0004722|GO:0006470
Cmo08g00579 362 Gene3D - 1 329 IPR036457 -
Cmo08g00579 362 Pfam Protein phosphatase 2C 23 102 IPR001932 -
Cmo08g00579 362 Pfam Protein phosphatase 2C 155 313 IPR001932 -
Cmo08g00579 362 SMART PP2C_4 13 326 IPR001932 -
Cmo08g00579 362 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 341 - -
Cmo08g00579 362 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Cmo08g00579 362 CDD PP2Cc 23 328 IPR001932 -
Cmo08g00579 362 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Cmo08g00579 362 MobiDBLite consensus disorder prediction 338 354 - -
Cmo08g00579 362 MobiDBLite consensus disorder prediction 336 362 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00579 Cmo-Chr8:3546049 Cmo09g00041 Cmo-Chr9:173255 3.74E-38 dispersed
Cmo01g01722 Cmo-Chr1:12898714 Cmo08g00579 Cmo-Chr8:3546049 7.32E-79 transposed
Cmo01g01724 Cmo-Chr1:12905977 Cmo08g00579 Cmo-Chr8:3546049 4.58E-31 transposed
Cmo17g00873 Cmo-Chr17:7972189 Cmo08g00579 Cmo-Chr8:3546049 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00579 K17499 - csv:101214132 686.026