Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo08g00579 | ATGGGGATATATCTGAGCTCCCCCAAAACAGAAAAGGCCTCGGATGATGGTGAGAACGAAAGGCTTCGGTACGGCCTTTCCTCAATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTGTCTAGATTTGGACACATCAACATCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAAGCAGTTTCTAAGTTCTGTGCCAAGTACCTTCACCGACAGGTGCTCAAGCACGAATCATACATGGCTGGAGATGTGGGAACTTCATTACAGAAGTCCTTTCTCAGAATGGATGAGATGATGCTTGGACAGAGGGGATGGAGAGAGTTAGCTGTTTTGGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGAGTAGCGAAGCTAACAACCAAGTGGACGATTGGCCTGCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATTCGAAATAACCAGCTTGTGGTAGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGCCAGGCATATAATCTATCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCTGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCACGAGCTATAGGAGACATGGAATTTAAGCAGAACAAAAGTATGCCTGCAGAAAAGCAGATTGTAACAGCCAACCCAGATGTAACAACTGTTGAGCTTTGTGAGGATGACGAGTTTCTTGTAATTGCCTGTGATGGGATCTGGGATTGCATGTCTAGCCAACAACTGGTCGACTACATTGGAGATCAACTAAAAACAGAAAGCAAACTCTCAGTTATTTGCGAGAGAGTATTTGACAGATGTTTGGCACCTTCAGCTGGTGGTGAAGGATGTGACAACATGACCATGATCTTGGTTCAGTTTAAGAAACCCTTCAACCCAAATGCTGCTTCTGCTGAGGAGCTGCCTTCATCGTCCAATCAACTTAGATCTGATGATCCAAACGAAGGCTCTTCTAAAACCGAATAG | 1089 | 45.55 | MGIYLSSPKTEKASDDGENERLRYGLSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKHESYMAGDVGTSLQKSFLRMDEMMLGQRGWRELAVLGDKMDKISGMIEGFIWSPKSSEANNQVDDWPAEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKTESKLSVICERVFDRCLAPSAGGEGCDNMTMILVQFKKPFNPNAASAEELPSSSNQLRSDDPNEGSSKTE | 362 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 3546049 | 3550909 | + | CmoCh08G005790.1 | Cmo08g00579 | 387312 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo08g00579 | 362 | ProSiteProfiles | PPM-type phosphatase domain profile. | 23 | 328 | IPR001932 | - | |
| Cmo08g00579 | 362 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 341 | IPR015655 | GO:0004722|GO:0006470 | |
| Cmo08g00579 | 362 | Gene3D | - | 1 | 329 | IPR036457 | - | |
| Cmo08g00579 | 362 | Pfam | Protein phosphatase 2C | 23 | 102 | IPR001932 | - | |
| Cmo08g00579 | 362 | Pfam | Protein phosphatase 2C | 155 | 313 | IPR001932 | - | |
| Cmo08g00579 | 362 | SMART | PP2C_4 | 13 | 326 | IPR001932 | - | |
| Cmo08g00579 | 362 | PANTHER | PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED | 1 | 341 | - | - | |
| Cmo08g00579 | 362 | SUPERFAMILY | PP2C-like | 3 | 330 | IPR036457 | - | |
| Cmo08g00579 | 362 | CDD | PP2Cc | 23 | 328 | IPR001932 | - | |
| Cmo08g00579 | 362 | ProSitePatterns | PPM-type phosphatase domain signature. | 52 | 60 | IPR000222 | GO:0043169 | |
| Cmo08g00579 | 362 | MobiDBLite | consensus disorder prediction | 338 | 354 | - | - | |
| Cmo08g00579 | 362 | MobiDBLite | consensus disorder prediction | 336 | 362 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo08g00579 | Cmo-Chr8:3546049 | Cmo09g00041 | Cmo-Chr9:173255 | 3.74E-38 | dispersed | |
| Cmo01g01722 | Cmo-Chr1:12898714 | Cmo08g00579 | Cmo-Chr8:3546049 | 7.32E-79 | transposed | |
| Cmo01g01724 | Cmo-Chr1:12905977 | Cmo08g00579 | Cmo-Chr8:3546049 | 4.58E-31 | transposed | |
| Cmo17g00873 | Cmo-Chr17:7972189 | Cmo08g00579 | Cmo-Chr8:3546049 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo08g00579 | K17499 | - | csv:101214132 | 686.026 |