Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00588 ATGGCCCGACCTCAACAACGGTATCGCGGTGTTCGTCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTAAAGACGAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGATGCAGCCCGAGCCTACGACGAGGCAGCGAGGCTGATGTGCGGCCCCAAAGCTAGAACTAACTTCCAACTCAATCTCAACGATCAACCCTCCTTTTCTTCTTCCTCCAACCTTCTCTCACCGGCGCTCATAGCCAAACTACACAAATGCCATTTAGCCTCACTCCAAATCACCAAAAAACACATCCATAAGCAACACCCGGGGTTCGACCTGAACGGCGGTCCTCCACCGAGCATTTCCAGGACCACCACCGGCCAGTGGCCACCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGATCAACAACAACGACAACAACAACATTCATCATCAGCCATGCCTTCAACCTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTAGATCTCGGACCGTTCGAAATCATTACATAG 552 51.27 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQITKKHIHKQHPGFDLNGGPPPSISRTTTGQWPPEETWVYSDEAQMEINNNDNNNIHHQPCLQPLEDDHIEQMIQELLDLGPFEIIT 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3585257 3586002 + CmoCh08G005880.1 Cmo08g00588 387321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00588 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 182 - -
Cmo08g00588 183 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cmo08g00588 183 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cmo08g00588 183 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cmo08g00588 183 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cmo08g00588 183 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cmo08g00588 183 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cmo08g00588 183 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cmo08g00588 183 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cmo08g00588 183 PANTHER ETHYLENE RESPONSE FACTOR 1 182 - -
Cmo08g00588 183 MobiDBLite consensus disorder prediction 106 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00588 Cmo-Chr8:3585257 Cmo11g00545 Cmo-Chr11:2650406 2.07E-31 dispersed
Cmo01g01535 Cmo-Chr1:11839451 Cmo08g00588 Cmo-Chr8:3585257 1.84E-54 wgd
Cmo01g00179 Cmo-Chr1:785316 Cmo08g00588 Cmo-Chr8:3585257 2.91E-50 wgd
Cmo12g00308 Cmo-Chr12:1914204 Cmo08g00588 Cmo-Chr8:3585257 2.42E-53 wgd
Cmo17g00858 Cmo-Chr17:7913388 Cmo08g00588 Cmo-Chr8:3585257 1.48E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10248 PF00847 AP2 7.50E-12 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00588 - - cmo:103499832 281.952