Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00589 ATGAATAATCTTCATGCTATTTTAATCCCCATGTGGGTTTTCTATTTCTTGTTCCTAATGATCGATGCCAGGCCAGAGCTTGCTGGGTTTTCAATTTCTCACATGGTAGCCAAAATGGAAGCTCAATCCCCAGGAGTTCCTGAGGTTATTAGAGTAGTTCATCACCAAGATTTGAACAAGAGAATTCTTGTAGCATTGGTTGTTTCTTCCACTCTTCTTGGAGCTATATTGTTGTTCCTTTTGTGTGTTTGGATATATCGTCGAAGAACGTCGAAACTCGATGATGGAGAATGTCGAAAGGATTTGGAGGTTTCGAAATCGACGATGATGAACCCCATATCCAGATTTAACTCCTTGAGGCTGGCTAATTTTAAAGGTTCGGTTTCGATGATCGATTATAAACTGTTGGAAGCCGCTACTGATAACTTCAGCAAAAGCAATGTTTTGGACGAGGGTAGTACCGGACATGTTTATAAAGCTCGATTCGATGATAAAATGCTTGCAGCTGTGAAGAGAATCGAGTATGGAGGACTGGATGCTGAACGAGAATTCGAGAATGAGGTGAACTGGTTGTGTAAAATACGACATCAAAACGTAATCAAGCTCTTGGGGCACTGCATTCGTGACGAAACACGGTTTCTTGTTTACGAGATGATGCAGAATGGATCTTTGGAGTCTCAATTGCACGGACCTTCTCATGGATCGGCTTTAACGTGGCATCTCCGAATGAAGATCGCGGTCGACATTGCAAGAGGATTGGAGTATCTTCACGAGCACCGAAGTCCTCCGGTCGTTCACCGTGACTTAAAATCATCAAATATCCTTCTAGATTCGGACTTTAACGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAGAACATAAAGCTCTCGGGAACGCTCGGATATGTCGCCCCCGAGTACCTTTTAGACGGTAAACTAACTGATAAAAGCGACGTCTATGCTTTCGGAGTCGTTCTTTTAGAGCTTCTGACCGGGAAAAAGCCCGTCGAGAAAATGGGACCTACTCAATCCCAATCTCTAGTTTCATGGGCAATCCCGCAACTTAGCGACCGATCAAAGCTACCGAAAGTTGTCGATCCCGTGATAAGGGACACAATGGATTTGAAGCACTTATACCAAGTTGCTGCTGTAGCTGTGTTATGTGTACAATCGGAACCGAGCTATCGACCGTTAGTTACCGACGTTCTGCATTCCCTGATCCCTCTTGTCCCTGTAGAGCTTGGAGGATCACTAAGAATTACCGAACCGCTGCATCTGAAAGAGCCTTCGTCGACCCGCTAA 1320 44.47 MNNLHAILIPMWVFYFLFLMIDARPELAGFSISHMVAKMEAQSPGVPEVIRVVHHQDLNKRILVALVVSSTLLGAILLFLLCVWIYRRRTSKLDDGECRKDLEVSKSTMMNPISRFNSLRLANFKGSVSMIDYKLLEAATDNFSKSNVLDEGSTGHVYKARFDDKMLAAVKRIEYGGLDAEREFENEVNWLCKIRHQNVIKLLGHCIRDETRFLVYEMMQNGSLESQLHGPSHGSALTWHLRMKIAVDIARGLEYLHEHRSPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVEKMGPTQSQSLVSWAIPQLSDRSKLPKVVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHLKEPSSTR 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3590391 3593126 - CmoCh08G005890.1 Cmo08g00589 387322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00589 439 SMART serkin_6 143 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00589 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Cmo08g00589 439 Gene3D Phosphorylase Kinase; domain 1 104 218 - -
Cmo08g00589 439 ProSiteProfiles Protein kinase domain profile. 143 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00589 439 Gene3D Transferase(Phosphotransferase) domain 1 219 417 - -
Cmo08g00589 439 PANTHER BNAC02G46490D PROTEIN 4 432 - -
Cmo08g00589 439 SUPERFAMILY Protein kinase-like (PK-like) 120 412 IPR011009 -
Cmo08g00589 439 Pfam Protein tyrosine and serine/threonine kinase 146 371 IPR001245 GO:0004672|GO:0006468
Cmo08g00589 439 PANTHER OS01G0750732 PROTEIN 4 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00366 Cmo-Chr5:1651509 Cmo08g00589 Cmo-Chr8:3590391 4.18E-169 dispersed
Cmo08g00589 Cmo-Chr8:3590391 Cmo10g01152 Cmo-Chr10:9795572 1.00E-89 dispersed
Cmo12g00305 Cmo-Chr12:1903675 Cmo08g00589 Cmo-Chr8:3590391 6.17E-157 wgd
Cmo17g00857 Cmo-Chr17:7907165 Cmo08g00589 Cmo-Chr8:3590391 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74523 PF07714 PK_Tyr_Ser-Thr 3.20E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00589 - - bhj:120085274 765.763