Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00610 ATGGCTACTGCGACTGAAGAAGAGGTTGATTATGAGAGTGATCCGGAAGAAGCGAAGCGGTTACTCGCGATGCGGAGGCGGGAGGCAAGCGATGATGAGGAGGGGGAAGGAGAAGGAGGAGAAGGGAAGCGGACGATCCGGAGGGTGGGGATTCATTCGGATGATTCCGATGGACAGGGTGGAGCAGCGGAGTATGACGATGAGGACGAATTGGGTGAAGAAGTAGACGAAGATGAGGTTGCTGTAGGAGTTGAGGACGTTGATGAAGGGGAGGAAGTTGGCCAAGAGGAGGATGAGGCGAGGCATAGGGATAGGAAGTTGGGTGGTCATGGAGAACTGGATGCCGCCTCCGGCAATGCGGTGAAGGAGCTGGACGATGATGGAAGATCGTTAGCAGAAGGACAGAGTGATTTGCCCGAGGAGAATCCAGAAGGGGAATTTAGTGAGGAGAAGAAGGTGAACGAGCCCTTTGCTGTTCCCACTGCCGGGGCTTTCTATATGCATGACGATCGGTTCAGGGACAATGCAGGTGGTCGACACAGGAGAATGCATGGTGGAAGGAGGCTGTGGGAGTCCAAGGATGACATGAAATGGGGCCATGACAAGTTTGAAGAAATTACTTTGCATGAAAGGCATCGTGGGGAGAGGAAAACTTCCAAGGGTCATCCACGAGGTCGAGGTAAAAGCCGAGGCATGGATCACGGTTATGCTCGAGCTCATGGATACATACTCATCCAGCATGTCCATTTTGCATATGACTTCAGATCTGTTAAGCCTCCTGAACGAGCATTACACAATCATACAGGGAGAACCTCGGCACCTCCTCCAAACGTAGAAGGTGAGCCTGTCTCTGTTAGGAAACATGTCTTTGCATCAAGCCTGAATTCTGCTTCTCCGCCTTTCTACCCTTCAGGGACGTCTAGTAAAAACATCCTTAAACTGGAAAAAACTGAAGTACAAGCTGGACTTCCTGAAAAGAATATGTATGGTGATAGTCGCTCTATGCCACAATCAAGTGTAATGGTGGATGGAAGGCATGTAGTTGATGCTGTTGCTATGGACAGGCTTTACATAAATGATTCAACCAATCCGTCTTTAGGAAATCTTTCATCTAAGACAAATTCTGGTTCTTCAGTGGTCAGTAATGCTCAGATTCCCCAATCTAGGCCTCAGGGAAGGGGTGCTGGTGTAGGATCTACCAGCTACCCTCCTGCACCACTCCATAGCCAAGTTAACAAGGTCTCTTTACCGACTCAATCACATGGTGTAACACGAACTCCTAGTCAAAATCGGGTTCAACCTGCTGTTCAGGTTCCTGTCCAGCAGTTGGGTCAGCGACCTGATAGTGGATCTCAATCTTCATCTCCACCTAAAACTGCTTTGTCAGTTAACTCAGTTGAATCTGGATCTGGAGAGGCAGATTCTTATTCAGAATCAAGCAAATTGAAAACTGCTTTGGTTGGAAAGGGAAAAGGTATGGCACAAGGTATTGGTGCAGGTTCCTTTATTTATAGTGGGGCTCAGATTATGGGAACCTCTGGGAACATGAATATTACTCATGGAGATCAGAACTTTCCTCATACACCAGCATTTTTGCCGGTTATGCAATTTGGAGGTCAGCATCCTGGTGGCATTGGAGTTCCTGCAGTTGGCATGGCATTTCCAGGATATGTTGCCCAGCCTCAACTTGGCATGGGAAATTCAGAAATGACATGGCTACCAGTTTTGGCTGGTGCAGCTGGGGCTCTGGGAGCTACATATTGTTCGCCTTATATTGCTGTTGATGGTTCTTATCATGCTCGACCCTCAGGACAGACATCATCTGTGGCAACGTTGAGAATTATGTTGTGGATACCAAAGAAAATAACACAAACAAATCCAGTAACGAGGCAAAGCCTTCACAGAATGGTAAGATTGTCACTCTTTGTACATGAATATGACCGATTTTCTATGTTTATCACATGGCATCATGGTTTTGGCACAACTGATCTTTCTCCTTTGCAGAACTTGAAAATGATGATGTTGGACAGCGACAAAATAAGCCACGTAGACCTCCTCACCCAGGAGGGAATGGAGATCAAAGAAAAGAAGAGAATTTCAAGCTTCTCCTCCTCTCCATTTATGTCATCATCTTCTTTGATGGCTTTCCTCCTGGTTTTCCTCTGCTTCATCCTTTACGCCCCGTTCGCCCCCGCGTTCGCCCTTGGCCCTGCCGGCCCCGGCTCCGGCGCCTCCTTCATTCCTAAAGACAACTTTCTCCTTGACTGTGGTGCCACAAAGGAACTTGGTGCACTCCCTGATGGAAGAGTGTTCAAAACTGATGACCAATCCCTGCAGTTCCTAGATGCCAAGGATGAGATGGTAGCCGCCGCCCCACCGGATACAAACGCGCCGTCCCCCGTCGATTTGACAGCCAGAGTCTTCCTCCAAGAAGCTGCTTACCATTTTCAGATGGCTGAGCCTGGATGGCATTGGCTGCGCCTCCATTTCTTGCCTGTTAAAACCAATGACTTTGATCTCTTGGAGGCCAAATTTTCGGTTGTCACTGAAAAGTATGTGTTGCTTCACAGCTTCAACATCAACAATGAATCCACATTTGTTCTCAAGGAGTTTCTACTTAATATCACTGAACCAAAACTCTCAATCAAGTTCCTCCCAATGAAGAATTCAGCTGCTTTCATCAACGCCATCGAGGTCGTTTCTGCTCCGGAGGGCATGATCTCCGACTCCAACATGGAGCTGTCTCCGGTCGGGATGGTCGACGGCCTAAGCAAATATGCATTTCAGACAGTGTTTAGGCTGAACATGGGAGGTCCTGTAATCACTCCAAGAAATGACACTCTTGGGAGGACATGGGAGAGAGACGAAGATTACAGGAAACCTTTAGCTGCTGGAAAGAATGTTGCTGTTCAGACCAACAGCATCAAATATCAAGACGGCCTGGAAGAAATTGGGAAGTTAATTGCGCCTCCAAGTGTTTATGCAAGTGCAGTTCAAATGGGAGATGTTCAATCCATGGAACCAAATTTCAATATCACATGGAGATTTGAGGCAGATCCCTCATTTGGGTATCTAATTCGCTTCCATTTCTGTGACATTGTCAGCAAAGTTCTAAACAATCTGTATTTCAATGTTTATGTAAATGGGAAGGCTGCCATAACCAACTTGGATTTGTCACACAAGCTAGGAGTTTTGGCAACTGCATACTACCAGGATGTTGTGATTAATTCTTCCTTCATTGTAGAGGGATTGACAATTCAGATTAGTCCAGCGAACGTCGATACGGGTGATAGGAATGCGATTCTAAATGGGTTAGAGGTAATGAAAATAAGCAATTCTGTTAATAGTCTGGATGGAGAGTTTGGAGTGGATGGTAAGTCTGCAAATGGGTCAAACCGTGGCACGGTTGCTGCTGTTGGGTTCGCAATGATGTTTGGGGCGTTTGTCGGGCTCGGTGCGATGGTGATGAAATGGCACAAGAGACCTCAAGATTGGCAGAAGAGGAACAGTTTCTCTTCATGGTTGCTTCCTGTACATGCTGGTGATTCAAGCTTTATGACAAGCAAGACCTCATATGGTTCACACAAGACCAACACTGGTTTAGGCCTCGGCAGGTTCTTCACTTTGGCAGAGCTGCAAGAAGCCACCAAGAACTTTGATTCCAATGCAATAATTGGTGTTGGTGGGTTTGGAAATGTGTACCTTGGAGTGATTGATGAAGGCACCAAAGTTGCTGTAAAAAGAGGAAATCCACAATCAGAACAAGGCATAACAGAGTTCCAAACAGAAATTCAAATGCTTTCAAAGCTAAGACACAGGCATTTGGTTTCTTTGATTGGATACTGTGATGAAAACTCAGAAATGATCTTGGTATATGAGTTCATGTCAAATGGCCCATTCAGAGATCACTTGTATGGAAAGGACTTGTCTCCGTTGTCGTGGAAGCAAAGGCTCGAGATCTGTATCGGATCAGCTCGAGGTCTTCATTACCTGCACACAGGATCAGCACAGGGAATCATTCACCGTGATGTCAAAACAACCAATATTTTGCTCGACGAGAACTTCACTGCAAAAGTTGCGGATTTTGGGCTGTCGAAGGATGCGCCAATGGGGCAGGGACACGTTAGTACTGCAGTGAAGGGGAGTTTTGGATACTTGGATCCAGAGTACTTTAGGAGGCAACAGTTGACAGAGAAATCAGATGTTTATTCGTTTGGGGTTGTTCTACTTGAGGCTTTGTGTGCAAGGCCGGCAATCAACCCATCTTTGACAAGGGAACAAGTGAACTTGGCTGATTGGGCAATGCAGAACAAGAGAAAAGGGACATTGGAAAAGATCATGGATCCTCTTCTAGTTGGAGCCATAAGTCCTGAGTCTATGAAGAAGTTTGCAGAAGCAGCAGAGAAGTGTCTTGCAGAACATGGTGTTGATAGGCCAAGCATGGGGGATGTGCTGTGGAATTTGGAGTATGCATTACAACTTCAAGAGTCGTACTCAAAAGGCAAGGCAGAAGAAGAAACCAAACCCGAAGCAACCGCACCTGTCACCCCCACCTCCGCTACTCCTACCGCTGTCGACGATTCGACAGATGCACCAAACTCCGACAACCGCCCTGCTGCCGTGAAGCCAGAACAGAACAGGCAACCGGCAGAGGTCCCAAACCCCATTGATGATCACTCCGGCAGTGCAATGTTTGCTCATTTTTCTAATCTCAATGGTAGATGA 4725 46.86 MATATEEEVDYESDPEEAKRLLAMRRREASDDEEGEGEGGEGKRTIRRVGIHSDDSDGQGGAAEYDDEDELGEEVDEDEVAVGVEDVDEGEEVGQEEDEARHRDRKLGGHGELDAASGNAVKELDDDGRSLAEGQSDLPEENPEGEFSEEKKVNEPFAVPTAGAFYMHDDRFRDNAGGRHRRMHGGRRLWESKDDMKWGHDKFEEITLHERHRGERKTSKGHPRGRGKSRGMDHGYARAHGYILIQHVHFAYDFRSVKPPERALHNHTGRTSAPPPNVEGEPVSVRKHVFASSLNSASPPFYPSGTSSKNILKLEKTEVQAGLPEKNMYGDSRSMPQSSVMVDGRHVVDAVAMDRLYINDSTNPSLGNLSSKTNSGSSVVSNAQIPQSRPQGRGAGVGSTSYPPAPLHSQVNKVSLPTQSHGVTRTPSQNRVQPAVQVPVQQLGQRPDSGSQSSSPPKTALSVNSVESGSGEADSYSESSKLKTALVGKGKGMAQGIGAGSFIYSGAQIMGTSGNMNITHGDQNFPHTPAFLPVMQFGGQHPGGIGVPAVGMAFPGYVAQPQLGMGNSEMTWLPVLAGAAGALGATYCSPYIAVDGSYHARPSGQTSSVATLRIMLWIPKKITQTNPVTRQSLHRMVRLSLFVHEYDRFSMFITWHHGFGTTDLSPLQNLKMMMLDSDKISHVDLLTQEGMEIKEKKRISSFSSSPFMSSSSLMAFLLVFLCFILYAPFAPAFALGPAGPGSGASFIPKDNFLLDCGATKELGALPDGRVFKTDDQSLQFLDAKDEMVAAAPPDTNAPSPVDLTARVFLQEAAYHFQMAEPGWHWLRLHFLPVKTNDFDLLEAKFSVVTEKYVLLHSFNINNESTFVLKEFLLNITEPKLSIKFLPMKNSAAFINAIEVVSAPEGMISDSNMELSPVGMVDGLSKYAFQTVFRLNMGGPVITPRNDTLGRTWERDEDYRKPLAAGKNVAVQTNSIKYQDGLEEIGKLIAPPSVYASAVQMGDVQSMEPNFNITWRFEADPSFGYLIRFHFCDIVSKVLNNLYFNVYVNGKAAITNLDLSHKLGVLATAYYQDVVINSSFIVEGLTIQISPANVDTGDRNAILNGLEVMKISNSVNSLDGEFGVDGKSANGSNRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDSSFMTSKTSYGSHKTNTGLGLGRFFTLAELQEATKNFDSNAIIGVGGFGNVYLGVIDEGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGKDLSPLSWKQRLEICIGSARGLHYLHTGSAQGIIHRDVKTTNILLDENFTAKVADFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPSLTREQVNLADWAMQNKRKGTLEKIMDPLLVGAISPESMKKFAEAAEKCLAEHGVDRPSMGDVLWNLEYALQLQESYSKGKAEEETKPEATAPVTPTSATPTAVDDSTDAPNSDNRPAAVKPEQNRQPAEVPNPIDDHSGSAMFAHFSNLNGR 1574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3704128 3712735 + CmoCh08G006100.1 Cmo08g00610 387343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00610 1574 SUPERFAMILY Protein kinase-like (PK-like) 1196 1489 IPR011009 -
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 211 233 - -
Cmo08g00610 1574 PANTHER OS07G0166700 PROTEIN 736 1545 IPR045272 GO:0004714|GO:0006468
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 1512 1541 - -
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 1500 1574 - -
Cmo08g00610 1574 Pfam Malectin-like domain 754 1110 IPR024788 -
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 1 155 - -
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 60 95 - -
Cmo08g00610 1574 SMART serkin_6 1219 1491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00610 1574 Gene3D - 926 1112 - -
Cmo08g00610 1574 Gene3D - 751 903 - -
Cmo08g00610 1574 Pfam CASC3/Barentsz eIF4AIII binding 139 228 IPR018545 GO:0003729|GO:0006397|GO:0035145
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 262 282 - -
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 96 111 - -
Cmo08g00610 1574 Gene3D Phosphorylase Kinase; domain 1 1185 1294 - -
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 442 480 - -
Cmo08g00610 1574 PANTHER BNAC03G60370D PROTEIN 736 1545 - -
Cmo08g00610 1574 CDD STKc_IRAK 1225 1489 - -
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 119 134 - -
Cmo08g00610 1574 Gene3D Transferase(Phosphotransferase) domain 1 1295 1513 - -
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 14 54 - -
Cmo08g00610 1574 SMART Btz_2 127 231 IPR018545 GO:0003729|GO:0006397|GO:0035145
Cmo08g00610 1574 ProSitePatterns Protein kinases ATP-binding region signature. 1225 1247 IPR017441 GO:0005524
Cmo08g00610 1574 ProSiteProfiles Protein kinase domain profile. 1219 1491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 361 410 - -
Cmo08g00610 1574 Pfam Protein tyrosine and serine/threonine kinase 1223 1481 IPR001245 GO:0004672|GO:0006468
Cmo08g00610 1574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1339 1351 IPR008271 GO:0004672|GO:0006468
Cmo08g00610 1574 MobiDBLite consensus disorder prediction 361 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00610 Cmo-Chr8:3704128 Cmo11g00186 Cmo-Chr11:903039 0 dispersed
Cmo17g00792 Cmo-Chr17:7601963 Cmo08g00610 Cmo-Chr8:3704128 0 transposed
Cmo17g00791 Cmo-Chr17:7594947 Cmo08g00610 Cmo-Chr8:3704128 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74524 PF12819 Malectin_like 2.50E-37 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00610 - - cpep:111778821 1675.6