Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00616 | ATGAGAAAAGAAGAAAATCACATCAGGGTTAATATTGGAGAATTCCCTGGTAGAATTACGCGTGCTCGGGCTGCTGCATTTAGTGCATCAGCACAGCTGCCTCCAAGAGTACCTGCGCAACAACAAGAGAAGCGGGTTGCACAAGCTAATCGGAAAAGAGCTGCTTCAGAAGAAAAGAGCTGCCATTCTATTGATAAATCATTACGACCATATAAACGGAGGGCCGTGCTTCAGGATGTCAGCAATGTATCCTGTGAACCTTCATACTCGGAATGTTTTGATGCAGCTAAAGTTCAGGCCAATTGTAGTAAGCCGACAATCAGAAACCGTTTCAAGAAGTCCAAAGGAGCTTCATCAGTTTGTGTGGCTAACTCCAAGGTTCCTCTTGACCGTAGAACCGAAGGAGCCTCATCAGTTGGTGTGGTTTACTCCAAGGTCCCTCTTGACCTTAGAACAGAAGATGTACAAGAAAATGTCAAATCAAAAGCTAAGTTGAAAGTTGAACATTCAAGTAATTCTGAAGACCATGGGACACATCATCGGGTAGGCGGTGGTATAAAGGAAGAGGTTACAAGTTATCTTCGGGATGATAATTCGAGATCTCTAAGTCCTTTAGAGTCTCAGAATTTTCAAAATAAAGAGAAAGTGTTGCCTCTGGGGACAAGAAGCAACCTGGACGTTATGGACATCGATTGTAATGACAAAGATGCTCAACTGTGCACTGTCTATGCCCATGAGATCTACAACAATTTACGTGTTGCTGAGCTAACCAGAAGGCCACGTCCAGATTTCATGGAAACAGTGCAAACAGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTATCGGAGGAATACAAGTTAGTACCAGACACTCTCTACTTAACTGTATTTTTCGTCGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCACTTGCATGTTAATTGCTTCGAAGTACGAAGAAATTTGTTCCCCACGCGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTTTTGAATATGGAAGGTCAGATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGTAAAATCTTTCCTCAGGAGATACGTTCGTGCTGCACAAACGACTTTCAAGACCCCTAGTCTTGAACTCGAGTGCCTTGCCAACTATCTAGCCGAATTAACACTGGTCGACTACGGTTTCTTGAATTTTCTTCCCTCGGTCATAGCTGCATCAGCTGTATTTCTTTCCAAATGGTCGTTGGATCAGTCGAGTCACCCATGGAATTCAACCCTGGAATACTATACCTCATATAAAGCATCAGATCTGAAACCAACTGTTCTTGCTTTACAAGATTTACAGTTGAACACCAATGGTTGTCCTCTCAGTTCGATTCGCGTCAAGTATCGACAAGAAAAGGAGTTGCCAGCTAGAGAGAGAGAGATGGGGAGCAATACACTGGTGGGATTTCAGGACCATCTGAAATTAGCGAGGGAATATGCTCTTGAAGGCCTGTATGATACTTCGGTAATCTTCTTTGATGGCGTTATTGCTCAGATCAACAAGCATCTTAGTTCAGTAGATGACCCTTTAATGCGTGCAAAATGGATGAATGTGAAAAAATCCCTTACTGAGGAAATAGAAGTTGTGAAGCAGTTAGATACAGAGAGAAAAGCTTTTAAGGAAATACCCATGGGTCGACGTGCAGCTTCTCCTCCAATTCATGCTAAGTCATCATTTGTTTTTCAACCGTTGGACGAGTATCCAACTTCTTCAGCTCCTTCCATGGACGATCCTGATGTCTGGAGGCCGCCAAGTAGGGACTCTGCAAGTAGAAGGCCTGCAAGGGCTGGTCAAGTCGGTACGAGGAAGTCACCACAGGATGGGGCTTGGGCTCGTGGTTCCACCAGACCAAATACTACTACTCGTGGTGCAAAGTCTGGTGGTCCAAGTCGTGTTAACTCTGGTGCCCGTGCGGCGACTACTGGAAAGAAAGGCTCTAGTACTACTGGTAAATCTAGCAAGACGGATTCTGCAAATGGTGACGATGAGGGAAATTCTAAGAAGGGACAGTATGAGGGACCTGATCCTGATCTAGCTGCTATGCTCGAAAGAGATGTGTTGGAAACTAGTCCAGGAGTGAGATGGGATGATGTTGCTGGCCTCAGTGAAGCAAAAAGACTTCTGGAGGAAGCTGTTGTTCTTCCCCTGTGGATGCCAGAATATTTTCAGGGAATAAGGAGACCATGGAAAGGAGTCCTAATGTTTGGCCCTCCTGGGACTGGGAAGACATTACTTGCGAAAGCTGTGGCAACCGAGTGTGGCACAACCTTTTTTAATGTTTCTTCTGCCACCTTGGCTTCAAAATGGCGTGGGGAGAGTGAGCGCATGGTCCGGTGCCTGTTTGAACTTGCAAGATCTCATGCACCAAGTACTATCTTCATTGACGAAATTGACTCCCTATGTAATGCTCGTGGGGCTTCTGGTGAGCACGAATCATCCAGAAGAGTGAAGTCAGAACTTTTAGTTCAGGTAGATGGTGTAAACAATAGTTCCTCCAGTGAAGACCGTAAGATAGTGATGGTTTTGGCTGCAACAAACTTCCCGTGGGACATTGATGAGGCACTTAGGAGGAGGCTTGAAAAGCGTATTTATATTCCTCTTCCTAATTTTGAGAGCAGAAAGGAGCTTATCAGGATAAATCTAAAAACTGTTGAGGTGGCTCCTGATGTGGATATCGATGATGTTGCTCGCCGGACAGAAGGATATAGTGGGGATGATCTAACAAATGTCTGCAGAGATGCTTCCTTGAATGGAATGAGACGTAAAATAGCTGGAAAAACTCGCGATGAGATTAAGAATATGGCCAAGGATGATATTTCAAAGGACCCTGTTGCCATGTGCGACTTTGAAGAAGCATTGAAGAAGGTACAGCGAAGTGTTTCTGCTGCTGACATCGAACGGCATGAGAAGTGTGGAATTCTGAACAAGTCAAATGAGCTGGTTTCATACTCAGCCCAAGGTACCGCTGTGTGCTCAGTCATAAATTGTGGGCAAGGAGCTTGCAAGGCATCTCATGCTTCATTTCTTGGTTTCGATATGCGTGCAGTTCTGGTTGGAGGAAACTCCAAATTGGTCTCTTCACCTTCCCTTATTGTATTATTCCCAACTGTTGCCGGGTTGTTTGGGGTGGTAATGGAACCTGCGTGGCCGATTGAGCAGCTTTGTTCCTACACACTTGCCACTGCGGCAAAGGCTTCGGGAATCTATTGA | 3318 | 44.82 | MRKEENHIRVNIGEFPGRITRARAAAFSASAQLPPRVPAQQQEKRVAQANRKRAASEEKSCHSIDKSLRPYKRRAVLQDVSNVSCEPSYSECFDAAKVQANCSKPTIRNRFKKSKGASSVCVANSKVPLDRRTEGASSVGVVYSKVPLDLRTEDVQENVKSKAKLKVEHSSNSEDHGTHHRVGGGIKEEVTSYLRDDNSRSLSPLESQNFQNKEKVLPLGTRSNLDVMDIDCNDKDAQLCTVYAHEIYNNLRVAELTRRPRPDFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFVDWFLSQNYIERQKLQLLGITCMLIASKYEEICSPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTVKSFLRRYVRAAQTTFKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWSLDQSSHPWNSTLEYYTSYKASDLKPTVLALQDLQLNTNGCPLSSIRVKYRQEKELPAREREMGSNTLVGFQDHLKLAREYALEGLYDTSVIFFDGVIAQINKHLSSVDDPLMRAKWMNVKKSLTEEIEVVKQLDTERKAFKEIPMGRRAASPPIHAKSSFVFQPLDEYPTSSAPSMDDPDVWRPPSRDSASRRPARAGQVGTRKSPQDGAWARGSTRPNTTTRGAKSGGPSRVNSGARAATTGKKGSSTTGKSSKTDSANGDDEGNSKKGQYEGPDPDLAAMLERDVLETSPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFELARSHAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSSSEDRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVDIDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMAKDDISKDPVAMCDFEEALKKVQRSVSAADIERHEKCGILNKSNELVSYSAQGTAVCSVINCGQGACKASHASFLGFDMRAVLVGGNSKLVSSPSLIVLFPTVAGLFGVVMEPAWPIEQLCSYTLATAAKASGIY | 1105 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3755573 | 3769052 | + | CmoCh08G006160.1 | Cmo08g00616 | 387349 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00616 | 1105 | MobiDBLite | consensus disorder prediction | 692 | 706 | - | - | |
Cmo08g00616 | 1105 | CDD | CYCLIN | 276 | 365 | IPR013763 | - | |
Cmo08g00616 | 1105 | Pfam | ATPase family associated with various cellular activities (AAA) | 768 | 903 | IPR003959 | GO:0005524|GO:0016887 | |
Cmo08g00616 | 1105 | SMART | Cyclin_C_2 | 375 | 493 | IPR004367 | - | |
Cmo08g00616 | 1105 | SUPERFAMILY | Cyclin-like | 375 | 488 | IPR036915 | - | |
Cmo08g00616 | 1105 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 719 | 998 | IPR027417 | - | |
Cmo08g00616 | 1105 | Hamap | Meiotic spindle formation protein mei-1 [mei-1]. | 503 | 1015 | IPR028596 | GO:0008017|GO:0008568|GO:0051013 | |
Cmo08g00616 | 1105 | Pfam | AAA+ lid domain | 925 | 966 | IPR041569 | - | |
Cmo08g00616 | 1105 | SMART | AAA_5 | 764 | 905 | IPR003593 | - | |
Cmo08g00616 | 1105 | MobiDBLite | consensus disorder prediction | 30 | 61 | - | - | |
Cmo08g00616 | 1105 | PANTHER | AAA DOMAIN-CONTAINING | 501 | 1006 | - | - | |
Cmo08g00616 | 1105 | Pfam | Cyclin, C-terminal domain | 375 | 488 | IPR004367 | - | |
Cmo08g00616 | 1105 | MobiDBLite | consensus disorder prediction | 46 | 61 | - | - | |
Cmo08g00616 | 1105 | SMART | cyclin_7 | 379 | 467 | IPR013763 | - | |
Cmo08g00616 | 1105 | SMART | cyclin_7 | 282 | 366 | IPR013763 | - | |
Cmo08g00616 | 1105 | Pfam | Cyclin, N-terminal domain | 246 | 372 | IPR006671 | - | |
Cmo08g00616 | 1105 | Gene3D | - | 726 | 1004 | IPR027417 | - | |
Cmo08g00616 | 1105 | MobiDBLite | consensus disorder prediction | 600 | 712 | - | - | |
Cmo08g00616 | 1105 | CDD | AAA | 762 | 903 | - | - | |
Cmo08g00616 | 1105 | SUPERFAMILY | Cyclin-like | 236 | 372 | IPR036915 | - | |
Cmo08g00616 | 1105 | MobiDBLite | consensus disorder prediction | 164 | 186 | - | - | |
Cmo08g00616 | 1105 | Coils | Coil | 39 | 59 | - | - | |
Cmo08g00616 | 1105 | MobiDBLite | consensus disorder prediction | 647 | 691 | - | - | |
Cmo08g00616 | 1105 | PANTHER | KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 | 501 | 1006 | - | - | |
Cmo08g00616 | 1105 | CDD | CYCLIN | 375 | 465 | IPR013763 | - | |
Cmo08g00616 | 1105 | Gene3D | - | 500 | 576 | - | - | |
Cmo08g00616 | 1105 | Gene3D | - | 246 | 488 | - | - | |
Cmo08g00616 | 1105 | Gene3D | - | 904 | 990 | - | - | |
Cmo08g00616 | 1105 | ProSitePatterns | AAA-protein family signature. | 875 | 894 | IPR003960 | GO:0005524|GO:0016887 | |
Cmo08g00616 | 1105 | Gene3D | - | 260 | 373 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00616 | Cmo-Chr8:3755573 | Cmo09g00483 | Cmo-Chr9:2184891 | 3.63E-131 | dispersed | |
Cmo20g00180 | Cmo-Chr20:897254 | Cmo08g00616 | Cmo-Chr8:3755573 | 3.16E-84 | dispersed | |
Cmo03g01393 | Cmo-Chr3:10175781 | Cmo08g00616 | Cmo-Chr8:3755573 | 4.94E-84 | transposed | |
Cmo04g03080 | Cmo-Chr4:21479522 | Cmo08g00616 | Cmo-Chr8:3755573 | 1.90E-72 | transposed | |
Cmo06g01149 | Cmo-Chr6:8802146 | Cmo08g00616 | Cmo-Chr8:3755573 | 4.88E-76 | transposed | |
Cmo17g00800 | Cmo-Chr17:7663630 | Cmo08g00616 | Cmo-Chr8:3755573 | 0 | transposed | |
Cmo01g01578 | Cmo-Chr1:12108486 | Cmo08g00616 | Cmo-Chr8:3755573 | 3.91E-120 | wgd | |
Cmo17g00798 | Cmo-Chr17:7649458 | Cmo08g00616 | Cmo-Chr8:3755573 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00616 | K07767 | - | csv:116405067 | 933.324 |