Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00616 ATGAGAAAAGAAGAAAATCACATCAGGGTTAATATTGGAGAATTCCCTGGTAGAATTACGCGTGCTCGGGCTGCTGCATTTAGTGCATCAGCACAGCTGCCTCCAAGAGTACCTGCGCAACAACAAGAGAAGCGGGTTGCACAAGCTAATCGGAAAAGAGCTGCTTCAGAAGAAAAGAGCTGCCATTCTATTGATAAATCATTACGACCATATAAACGGAGGGCCGTGCTTCAGGATGTCAGCAATGTATCCTGTGAACCTTCATACTCGGAATGTTTTGATGCAGCTAAAGTTCAGGCCAATTGTAGTAAGCCGACAATCAGAAACCGTTTCAAGAAGTCCAAAGGAGCTTCATCAGTTTGTGTGGCTAACTCCAAGGTTCCTCTTGACCGTAGAACCGAAGGAGCCTCATCAGTTGGTGTGGTTTACTCCAAGGTCCCTCTTGACCTTAGAACAGAAGATGTACAAGAAAATGTCAAATCAAAAGCTAAGTTGAAAGTTGAACATTCAAGTAATTCTGAAGACCATGGGACACATCATCGGGTAGGCGGTGGTATAAAGGAAGAGGTTACAAGTTATCTTCGGGATGATAATTCGAGATCTCTAAGTCCTTTAGAGTCTCAGAATTTTCAAAATAAAGAGAAAGTGTTGCCTCTGGGGACAAGAAGCAACCTGGACGTTATGGACATCGATTGTAATGACAAAGATGCTCAACTGTGCACTGTCTATGCCCATGAGATCTACAACAATTTACGTGTTGCTGAGCTAACCAGAAGGCCACGTCCAGATTTCATGGAAACAGTGCAAACAGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTATCGGAGGAATACAAGTTAGTACCAGACACTCTCTACTTAACTGTATTTTTCGTCGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCACTTGCATGTTAATTGCTTCGAAGTACGAAGAAATTTGTTCCCCACGCGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTTTTGAATATGGAAGGTCAGATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGTAAAATCTTTCCTCAGGAGATACGTTCGTGCTGCACAAACGACTTTCAAGACCCCTAGTCTTGAACTCGAGTGCCTTGCCAACTATCTAGCCGAATTAACACTGGTCGACTACGGTTTCTTGAATTTTCTTCCCTCGGTCATAGCTGCATCAGCTGTATTTCTTTCCAAATGGTCGTTGGATCAGTCGAGTCACCCATGGAATTCAACCCTGGAATACTATACCTCATATAAAGCATCAGATCTGAAACCAACTGTTCTTGCTTTACAAGATTTACAGTTGAACACCAATGGTTGTCCTCTCAGTTCGATTCGCGTCAAGTATCGACAAGAAAAGGAGTTGCCAGCTAGAGAGAGAGAGATGGGGAGCAATACACTGGTGGGATTTCAGGACCATCTGAAATTAGCGAGGGAATATGCTCTTGAAGGCCTGTATGATACTTCGGTAATCTTCTTTGATGGCGTTATTGCTCAGATCAACAAGCATCTTAGTTCAGTAGATGACCCTTTAATGCGTGCAAAATGGATGAATGTGAAAAAATCCCTTACTGAGGAAATAGAAGTTGTGAAGCAGTTAGATACAGAGAGAAAAGCTTTTAAGGAAATACCCATGGGTCGACGTGCAGCTTCTCCTCCAATTCATGCTAAGTCATCATTTGTTTTTCAACCGTTGGACGAGTATCCAACTTCTTCAGCTCCTTCCATGGACGATCCTGATGTCTGGAGGCCGCCAAGTAGGGACTCTGCAAGTAGAAGGCCTGCAAGGGCTGGTCAAGTCGGTACGAGGAAGTCACCACAGGATGGGGCTTGGGCTCGTGGTTCCACCAGACCAAATACTACTACTCGTGGTGCAAAGTCTGGTGGTCCAAGTCGTGTTAACTCTGGTGCCCGTGCGGCGACTACTGGAAAGAAAGGCTCTAGTACTACTGGTAAATCTAGCAAGACGGATTCTGCAAATGGTGACGATGAGGGAAATTCTAAGAAGGGACAGTATGAGGGACCTGATCCTGATCTAGCTGCTATGCTCGAAAGAGATGTGTTGGAAACTAGTCCAGGAGTGAGATGGGATGATGTTGCTGGCCTCAGTGAAGCAAAAAGACTTCTGGAGGAAGCTGTTGTTCTTCCCCTGTGGATGCCAGAATATTTTCAGGGAATAAGGAGACCATGGAAAGGAGTCCTAATGTTTGGCCCTCCTGGGACTGGGAAGACATTACTTGCGAAAGCTGTGGCAACCGAGTGTGGCACAACCTTTTTTAATGTTTCTTCTGCCACCTTGGCTTCAAAATGGCGTGGGGAGAGTGAGCGCATGGTCCGGTGCCTGTTTGAACTTGCAAGATCTCATGCACCAAGTACTATCTTCATTGACGAAATTGACTCCCTATGTAATGCTCGTGGGGCTTCTGGTGAGCACGAATCATCCAGAAGAGTGAAGTCAGAACTTTTAGTTCAGGTAGATGGTGTAAACAATAGTTCCTCCAGTGAAGACCGTAAGATAGTGATGGTTTTGGCTGCAACAAACTTCCCGTGGGACATTGATGAGGCACTTAGGAGGAGGCTTGAAAAGCGTATTTATATTCCTCTTCCTAATTTTGAGAGCAGAAAGGAGCTTATCAGGATAAATCTAAAAACTGTTGAGGTGGCTCCTGATGTGGATATCGATGATGTTGCTCGCCGGACAGAAGGATATAGTGGGGATGATCTAACAAATGTCTGCAGAGATGCTTCCTTGAATGGAATGAGACGTAAAATAGCTGGAAAAACTCGCGATGAGATTAAGAATATGGCCAAGGATGATATTTCAAAGGACCCTGTTGCCATGTGCGACTTTGAAGAAGCATTGAAGAAGGTACAGCGAAGTGTTTCTGCTGCTGACATCGAACGGCATGAGAAGTGTGGAATTCTGAACAAGTCAAATGAGCTGGTTTCATACTCAGCCCAAGGTACCGCTGTGTGCTCAGTCATAAATTGTGGGCAAGGAGCTTGCAAGGCATCTCATGCTTCATTTCTTGGTTTCGATATGCGTGCAGTTCTGGTTGGAGGAAACTCCAAATTGGTCTCTTCACCTTCCCTTATTGTATTATTCCCAACTGTTGCCGGGTTGTTTGGGGTGGTAATGGAACCTGCGTGGCCGATTGAGCAGCTTTGTTCCTACACACTTGCCACTGCGGCAAAGGCTTCGGGAATCTATTGA 3318 44.82 MRKEENHIRVNIGEFPGRITRARAAAFSASAQLPPRVPAQQQEKRVAQANRKRAASEEKSCHSIDKSLRPYKRRAVLQDVSNVSCEPSYSECFDAAKVQANCSKPTIRNRFKKSKGASSVCVANSKVPLDRRTEGASSVGVVYSKVPLDLRTEDVQENVKSKAKLKVEHSSNSEDHGTHHRVGGGIKEEVTSYLRDDNSRSLSPLESQNFQNKEKVLPLGTRSNLDVMDIDCNDKDAQLCTVYAHEIYNNLRVAELTRRPRPDFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFVDWFLSQNYIERQKLQLLGITCMLIASKYEEICSPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTVKSFLRRYVRAAQTTFKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWSLDQSSHPWNSTLEYYTSYKASDLKPTVLALQDLQLNTNGCPLSSIRVKYRQEKELPAREREMGSNTLVGFQDHLKLAREYALEGLYDTSVIFFDGVIAQINKHLSSVDDPLMRAKWMNVKKSLTEEIEVVKQLDTERKAFKEIPMGRRAASPPIHAKSSFVFQPLDEYPTSSAPSMDDPDVWRPPSRDSASRRPARAGQVGTRKSPQDGAWARGSTRPNTTTRGAKSGGPSRVNSGARAATTGKKGSSTTGKSSKTDSANGDDEGNSKKGQYEGPDPDLAAMLERDVLETSPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFELARSHAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSSSEDRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVDIDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMAKDDISKDPVAMCDFEEALKKVQRSVSAADIERHEKCGILNKSNELVSYSAQGTAVCSVINCGQGACKASHASFLGFDMRAVLVGGNSKLVSSPSLIVLFPTVAGLFGVVMEPAWPIEQLCSYTLATAAKASGIY 1105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3755573 3769052 + CmoCh08G006160.1 Cmo08g00616 387349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00616 1105 MobiDBLite consensus disorder prediction 692 706 - -
Cmo08g00616 1105 CDD CYCLIN 276 365 IPR013763 -
Cmo08g00616 1105 Pfam ATPase family associated with various cellular activities (AAA) 768 903 IPR003959 GO:0005524|GO:0016887
Cmo08g00616 1105 SMART Cyclin_C_2 375 493 IPR004367 -
Cmo08g00616 1105 SUPERFAMILY Cyclin-like 375 488 IPR036915 -
Cmo08g00616 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 998 IPR027417 -
Cmo08g00616 1105 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 503 1015 IPR028596 GO:0008017|GO:0008568|GO:0051013
Cmo08g00616 1105 Pfam AAA+ lid domain 925 966 IPR041569 -
Cmo08g00616 1105 SMART AAA_5 764 905 IPR003593 -
Cmo08g00616 1105 MobiDBLite consensus disorder prediction 30 61 - -
Cmo08g00616 1105 PANTHER AAA DOMAIN-CONTAINING 501 1006 - -
Cmo08g00616 1105 Pfam Cyclin, C-terminal domain 375 488 IPR004367 -
Cmo08g00616 1105 MobiDBLite consensus disorder prediction 46 61 - -
Cmo08g00616 1105 SMART cyclin_7 379 467 IPR013763 -
Cmo08g00616 1105 SMART cyclin_7 282 366 IPR013763 -
Cmo08g00616 1105 Pfam Cyclin, N-terminal domain 246 372 IPR006671 -
Cmo08g00616 1105 Gene3D - 726 1004 IPR027417 -
Cmo08g00616 1105 MobiDBLite consensus disorder prediction 600 712 - -
Cmo08g00616 1105 CDD AAA 762 903 - -
Cmo08g00616 1105 SUPERFAMILY Cyclin-like 236 372 IPR036915 -
Cmo08g00616 1105 MobiDBLite consensus disorder prediction 164 186 - -
Cmo08g00616 1105 Coils Coil 39 59 - -
Cmo08g00616 1105 MobiDBLite consensus disorder prediction 647 691 - -
Cmo08g00616 1105 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 501 1006 - -
Cmo08g00616 1105 CDD CYCLIN 375 465 IPR013763 -
Cmo08g00616 1105 Gene3D - 500 576 - -
Cmo08g00616 1105 Gene3D - 246 488 - -
Cmo08g00616 1105 Gene3D - 904 990 - -
Cmo08g00616 1105 ProSitePatterns AAA-protein family signature. 875 894 IPR003960 GO:0005524|GO:0016887
Cmo08g00616 1105 Gene3D - 260 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00616 Cmo-Chr8:3755573 Cmo09g00483 Cmo-Chr9:2184891 3.63E-131 dispersed
Cmo20g00180 Cmo-Chr20:897254 Cmo08g00616 Cmo-Chr8:3755573 3.16E-84 dispersed
Cmo03g01393 Cmo-Chr3:10175781 Cmo08g00616 Cmo-Chr8:3755573 4.94E-84 transposed
Cmo04g03080 Cmo-Chr4:21479522 Cmo08g00616 Cmo-Chr8:3755573 1.90E-72 transposed
Cmo06g01149 Cmo-Chr6:8802146 Cmo08g00616 Cmo-Chr8:3755573 4.88E-76 transposed
Cmo17g00800 Cmo-Chr17:7663630 Cmo08g00616 Cmo-Chr8:3755573 0 transposed
Cmo01g01578 Cmo-Chr1:12108486 Cmo08g00616 Cmo-Chr8:3755573 3.91E-120 wgd
Cmo17g00798 Cmo-Chr17:7649458 Cmo08g00616 Cmo-Chr8:3755573 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00616 K07767 - csv:116405067 933.324