Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00640 ATGAGGAAGAGAGAAGAAGTGAAGAAGCTGCGTTCTTCGTCTTTATTTGGGGGTTTAAGCAATCCAAGAGAGTCCACGTTGGGTGACCAAAAACTTGGTTCTTCTTGCCAAGAACAGCTGCTCTGTTCTGGGAATTTGATGATGTTTATGAATCATCAAGACCCTTCTTGCGGTGATTACTCTGAGATTTTTTCTGGGGTTTCTTCAAATTATGTTGAATCTGTGGGAGATAGAAGTAATGGTGAAATGGGTTTCATTCCACCGGTTGTGGGAATTTTAGATCACTCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCACCTTCTGTTGTTTCATTGCCTTCATTTCCTTCCCAATATCAGACCCGTGCCTTGCCTTCTTCATTTATCTGTGCACCTCCTTCGATCTTTGAGCAAAGGTCGAATCCGAAACTGTGTATGTCTGATGCAAAAAATGGTATGTATATGTCGGTTGCTGCTGCGAATTTGGTTTCGAATTCGATATACATTGAAGCTGCACAGCAGTTGCTTGATGAAGTTGTTAGCATTGGGGAAGCTTTGAAGGAGTTGAAGTCTAAGAAACTCAAGGGTTCTAATGATCTGACTGGGGAGATGTGTTCCGATGCGACGGATTCGTTGCTTGCGAATTCGTCTGGCGATCTATCGCCTACCGAACGACAGGACTTGAAGAACAAAAACTCGAAGCTGTTGTCCTTGTTGGGTGAGGTCGATCGAAGATACAAGCAATACTACCAACAAGAGCAGTTCTTAGCATCATCGTTTGACCTGGTAGCAGGCCGTGGGGCTGCAGAGTTCTACACTGCACTTGCACATTGGACTATTTCGTGTCACTTTCGACGCCTGCGAGATGCCATCAATGCACAGATTAAGACCACAAGAAGAACCTTAGGGGAGCAAGATGCTTCACATTCTGGCCAAGAGGGCATTCCTCGTCTCCGCTTTGTCGATCAGCAGCTCAGGCAACAGAGAACCCTTCAGCAGCTCGGCGTCACGTCACATAGTTGGAGGCCTCAACGAGGACTACCCGAAAGCTCCGTGTCGATTCTTCGTGCTTGGCTGTTTGAACACTTCCTCCATCCATATCCCAAAGATTCAGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACTCGAAACCAAGTTGCAAACTGGTTCATAAACGCGCGTGTTCGGCTATGGAAACCGATGGTCGAAGAGATGTACAAAGAAGAATTCGGAGACACGAACATGGACATCAAATCCTCACCAGAAAACGCATCCAAACCATCATGGAACAACAACTCACTCTTCTCCGAGGACAGGTCAGGAGACAAGTTACACGACAACACGAAGTCAGCAGCAAGCAACAACGAGCGAGTTCTCTACTGTCCGTGTTCTACCGACGACATGATCAAGCCGAGCAACTTCTCAGTCGACGGAGATGTTTCACTAGCACTGGAGCTGAAGCACTGCGAAGGCGAAGAATTCGGCATGTTCGGAAGTAGTAACAATAGAATCGTCGGTTCTATAGAGCTTGAGACACAAGATTTCCAATGCAGGCTCCCAAGCTCAAATATGTTGCATGATTTTGTAGTATGA 1611 46.06 MRKREEVKKLRSSSLFGGLSNPRESTLGDQKLGSSCQEQLLCSGNLMMFMNHQDPSCGDYSEIFSGVSSNYVESVGDRSNGEMGFIPPVVGILDHSNFQCQGVSLSLSTHSPSVVSLPSFPSQYQTRALPSSFICAPPSIFEQRSNPKLCMSDAKNGMYMSVAAANLVSNSIYIEAAQQLLDEVVSIGEALKELKSKKLKGSNDLTGEMCSDATDSLLANSSGDLSPTERQDLKNKNSKLLSLLGEVDRRYKQYYQQEQFLASSFDLVAGRGAAEFYTALAHWTISCHFRRLRDAINAQIKTTRRTLGEQDASHSGQEGIPRLRFVDQQLRQQRTLQQLGVTSHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDTNMDIKSSPENASKPSWNNNSLFSEDRSGDKLHDNTKSAASNNERVLYCPCSTDDMIKPSNFSVDGDVSLALELKHCEGEEFGMFGSSNNRIVGSIELETQDFQCRLPSSNMLHDFVV 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4164456 4166938 + CmoCh08G006400.1 Cmo08g00640 387373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00640 536 MobiDBLite consensus disorder prediction 422 443 - -
Cmo08g00640 536 MobiDBLite consensus disorder prediction 1 30 - -
Cmo08g00640 536 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 462 - -
Cmo08g00640 536 SUPERFAMILY Homeodomain-like 347 414 IPR009057 -
Cmo08g00640 536 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 40 462 - -
Cmo08g00640 536 MobiDBLite consensus disorder prediction 422 456 - -
Cmo08g00640 536 CDD homeodomain 346 407 IPR001356 GO:0003677
Cmo08g00640 536 Pfam Associated with HOX 168 296 IPR006563 -
Cmo08g00640 536 Gene3D - 341 420 - -
Cmo08g00640 536 MobiDBLite consensus disorder prediction 14 30 - -
Cmo08g00640 536 SMART prehox3 162 298 IPR006563 -
Cmo08g00640 536 ProSiteProfiles 'Homeobox' domain profile. 343 406 IPR001356 GO:0003677
Cmo08g00640 536 SMART HOX_1 346 410 IPR001356 GO:0003677
Cmo08g00640 536 Pfam Homeobox KN domain 363 402 IPR008422 GO:0003677|GO:0006355
Cmo08g00640 536 Coils Coil 177 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00640 Cmo-Chr8:4164456 Cmo20g00834 Cmo-Chr20:4158381 1.09E-104 dispersed
Cmo17g00824 Cmo-Chr17:7756250 Cmo08g00640 Cmo-Chr8:4164456 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10252 PF07526 POX 1.20E-36 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00640 - - cmax:111494608 978.778