Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00643 ATGGAAGGTCCTTCGCTTCACGGTACGCTTCACGCCACAATCTATGAAGTCGACAGGTTGCATACTGGTGGTGGATCCAACGTCTTCAGCAAGTTAATGCAAAACCTTGAGGAGGCGGTTGGAATTGGCAAAGGAGTTACCAGACTATATGCAACTATAGATTTAGAAAAGGCTAGAGTCGGGAGGACACGAAAATTGGAAAATGAACCCCATAACCCTAGATGGTATGAATCTTTTCACGTCTACTGTGCCCATAGGGCATCAAATGTTATCTTCACCGTGAAGGATGATAACCCTATCGGTGCAAGTTTGATTGGACGTGCATATGTACCGGTGGAAGACATCGTAGATGGGGAGGAAGTTGACAGGTGGGTTCCACTCTTAGATGAAGAAAAAAATCCAATTGAAGGAGAATCTAAGATCCGTGTCAAGCTTCAATACTTCAGTGTTACTAAAGATCGCAATTGGGGTCGTGGTATAAGAAGCCACAAATTTCCTGGAGTCCCCTACACATATTACCCACAGAGACAAGGTTGTAAAGTCTCTTTGTATCAAGATGCTCATATCCCTGATAATTTTGTTCCTAAAATACCTCTTGCTGGAGGAAAGAGTTATGCTCCGTCCAGATGTTGGGAAGATATTTTCGACGCTATACAAAATGCAAAACACATGATCTACATCACAGGATGGTCTGTTTATACAGAAATCGCCTTGATAAGAGACTCAAGGAGGCCAAAGCCCGGAGGAGACACCATGCTTGGTGAGCTGCTTAAGAAGAAAGCAAGTGAAGGCGTCAGAGTTCTTATGCTTGTCTGGGATGACAGAACATCAGTCGGTTTACTAAAGAAGGATGGTCTGATGGCTACTCATGATGAAGAAACTGAACAGTTCTTTCGAGATACTGATGTCCACTGTATCTTGTGCCCTCGTAATCCTGACGATGGTGGAAGCATTGTTCAAGACCTACAAATCTCTACAATGTTCACTCACCATCAGAAGATTGTTGTTGTGGATAGTCCAATGCCAAGTGGAGATTCGAATAAGAGGAGAATTGTGAGTTTCGTTGGTGGCCTTGATCTTTGTGATGGCAGGTATGACACACCCTTTCATTCCCTCTTCAGGACATTGGATACTGCACATCACGATGATTTCCATCAACCCAACTTTCCTGGTGCATTAATAACAAAAGGTGGACCAAGGGAACCTTGGCACGACATCCATTCCCGACTTGAAGGGCCCATTGCCTGGGATGTCTTATTCAATTTTGAGCAAAGGTGGAAGAAACAAGGTGGGAAGGATGTCCTTGTGCAGCTTCGAGAGCTTGATGAAATAATTATTCCTCCATCTCCTGTTATGTACCCAGATGATCATGAAACCTGGAATGTTCAATTGTTTAGATCTATAGATGGTGGGGCAGCCTTTGGCTTTCCTGAGACCCCCGAAGATGCTGCTAGAGCTGGGCTAGTTAGTGGGAAAGATAACATTATTGATCGAAGTATTCAAGACGCTTACATAAATGCTATTCGGCGGGCTAAGAATTTTATTTATATTGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGAGGATATCAAGCCTGAGGATATTGGAGCCTTGCACTGTATCCCAAGAGAGCTTTCCCTAAAGATCGTAAGTAAGATCGCAGCAGGAGAAAGGTTCACCGTCTATGTAGTTGTCCCAATGTGGCCAGAAGGAATACCAGAAAGTGGATCGGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTTGAAATGATGTATAAAGACGTGATTCAGGCTCTTAGAGATAACGGTATCGAGGAGGACCCCCGTAACTACTTGACATTCTTCTGTCTTGGCAATCGGGAAGTCAAGAGGTCTGGAGAATATGAACCTCCAGAGGCACCAGAGGAGGATTCCGATTACATGAAAGCCCAGCAGGCCAGGCGTTTCATGATTTATGTTCACACCAAGATGATGATTGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGAGCAAGGGACTCTGAGATAGCTATGGGCGGTTATCAGCCATATCATCTGTCAACCCATGAACCTGCACGTGGTCAAGTTCACGGATTCCGAATGTCCCTATGGTATGAACACCTTGGTATGCTTGATGAATCTTTCCTTCGGCCAGAAAGCGAAGAATGTGCTTCAAAGGTTAACAGAATTGCTGATAAGTATTGGGATCTGTTTTCAAGTGAAGCACTTGAGAGGGACTTGCCCGGTCACCTCCTCCGCTATCCCATCGGCATAAGCAGTGAAGGTAATGTGACAGAGCTCCCAGGATTTGAGTTCTTCCCCGACACCAAAGCACGTATACTCGGAACCAAATCTGACTACCTCCCCCCCATCCTCACTACTTAG 2427 44.62 MEGPSLHGTLHATIYEVDRLHTGGGSNVFSKLMQNLEEAVGIGKGVTRLYATIDLEKARVGRTRKLENEPHNPRWYESFHVYCAHRASNVIFTVKDDNPIGASLIGRAYVPVEDIVDGEEVDRWVPLLDEEKNPIEGESKIRVKLQYFSVTKDRNWGRGIRSHKFPGVPYTYYPQRQGCKVSLYQDAHIPDNFVPKIPLAGGKSYAPSRCWEDIFDAIQNAKHMIYITGWSVYTEIALIRDSRRPKPGGDTMLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEQFFRDTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPSGDSNKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGALITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLVQLRELDEIIIPPSPVMYPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPEDIKPEDIGALHCIPRELSLKIVSKIAAGERFTVYVVVPMWPEGIPESGSVQAILDWQRRTFEMMYKDVIQALRDNGIEEDPRNYLTFFCLGNREVKRSGEYEPPEAPEEDSDYMKAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPYHLSTHEPARGQVHGFRMSLWYEHLGMLDESFLRPESEECASKVNRIADKYWDLFSSEALERDLPGHLLRYPIGISSEGNVTELPGFEFFPDTKARILGTKSDYLPPILTT 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4179383 4183741 + CmoCh08G006430.1 Cmo08g00643 387376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00643 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 149 IPR035892 -
Cmo08g00643 808 SMART C2_3c 9 124 IPR000008 -
Cmo08g00643 808 PANTHER PHOSPHOLIPASE D ALPHA 1 6 808 - -
Cmo08g00643 808 SUPERFAMILY Phospholipase D/nuclease 151 441 - -
Cmo08g00643 808 Pfam Phospholipase D C terminal 726 798 IPR024632 -
Cmo08g00643 808 SUPERFAMILY Phospholipase D/nuclease 443 737 - -
Cmo08g00643 808 CDD C2_plant_PLD 6 148 - -
Cmo08g00643 808 Gene3D Endonuclease Chain A 200 442 - -
Cmo08g00643 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Cmo08g00643 808 Gene3D Endonuclease Chain A 480 697 - -
Cmo08g00643 808 Gene3D C2 domain 7 157 IPR035892 -
Cmo08g00643 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Cmo08g00643 808 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Cmo08g00643 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Cmo08g00643 808 Pfam C2 domain 36 127 IPR000008 -
Cmo08g00643 808 SMART pld_4 654 681 IPR001736 GO:0003824
Cmo08g00643 808 SMART pld_4 326 364 IPR001736 GO:0003824
Cmo08g00643 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cmo08g00643 808 PANTHER PHOSPHOLIPASE D 6 808 IPR015679 -
Cmo08g00643 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00146 Cmo-Chr1:632664 Cmo08g00643 Cmo-Chr8:4179383 0 dispersed
Cmo05g00384 Cmo-Chr5:1728849 Cmo08g00643 Cmo-Chr8:4179383 0 dispersed
Cmo08g00643 Cmo-Chr8:4179383 Cmo17g00004 Cmo-Chr17:29457 0 dispersed
Cmo08g00643 Cmo-Chr8:4179383 Cmo08g00909 Cmo-Chr8:5910019 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00643 K01115 - csv:101206113 1563.51