Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00647 ATGGGAATGAACTCCAATCGAGTTGAGAGCTTGGAATGTCGTGAAACGGTGTTGAGAATTCCGCCGGAGGAAATGTCGGCGCCTCCGCAACAGACTGAGGAGATTCACAAAGTCTGCTTGCCGCCTTCGCAGACTACACTTCAGAAACTCAAGCACAAGCTCTCCGAGGTGTTCTTCCCGGATGATCCGTTTTACAGATTCAAGAACCAAACGTGGTTCAGAAAACTGCTTTTAGGCCTTCAATTTCTGTTTCCTATTTTCCAATGGGGACCTGATTATACCCTAGCTCTTTTCAAGTCTGACATCGTTTCTGGTCTCACAATTGCTAGCCTTGCTATTCCTCAGGGAATAAGTTATGCGAAACTTGCGAATTTGCCGCCAATCATCGGTTTATATTCAAGTTTTGTGCCTCCACTGATATATTCTGTTCTTGGAAGCTCTAGACATCTTGCTGTTGGTCCTGTTTCTATCGCCTCTTTGGTCATGGGATCGATGATCACTGAGGCAGTCTCTTTTAATGAACAGCCAACTCTGTTTCTTAAGTTAGCTTTTACAGCCACCTTCTTTGCTGGTGTATTCCAAGCATCTTTAGGTTTGTTAAGGCTAGGCTTTGTCATTGATTTTCTGTCAAAGGCTACTTTAGTTGGGTTTATGGCTGGTGCAGCAGTCATTGTGTCATTGCAACAGCTCAAAGGGTTGCTTGGAATCATCCATTTCACCAACAAAATGCAATTTATTCCTGTCATGTCGTCTGTCTTTCACCACAAAGATGAGTGGTCTTGGCAAACTATTGTTTTAGGCTCCATTTTCCTACTCTTTCTTCTGGGAACGAGACATATAAGTATCAAGAAACCAAAGCTTTTCTGGATTTCAGCAGCTGCTCCACTGACATCAGTTATATTGTCCACTATTTTAGTCTTCCTTCTTAGAGACAAAGTTCCTGGAATCTCAGTGATTGGTCATTTGCCAAAGGGCATCAATCCACCATCTTTGAACATGCTGTACTTTACTGGTCCTCAATTGGCACTTGCCATAAAAACTGGCATTATAACTGGAATTCTCTCGCTGACTGAAGGAATTGCCGTAGGAAGGACGTTCGCTGGTTTGAAAAACTATCAAGTGGATGGGAATAAAGAAATGATGGCCATTGGTTTTATGAACATGGCTGGATCTTGTTCTTCCTGCTATGTCACAACAGGGTCATTTTCTCGATCGGCTGTGAATTATAATGCCGGGGCACAAACAGCAGTCTCAAATGTTGTGATGTCTGCAACCGTGCTCATAACGTTGTTGTTTCTGATGCCACTGTTCCATTATACTCCAAATTTCATCCTAGCAGCCATCATTATAACAGCAGTAATTGGGCTAATTGATTACCAAGCAGCCTGTAGGTTATGGAAAGTTGACAAGCTTGATTTCGTAGCTTGTGTTTGTTCTTTCTTCGGCGTTCTTTTCATCTCAGTTCCGTTGGGTCTTGCCATTGCAGTTGGAGTATCTATTTTCAAGATTCTTCTGCATGTCACGAGGCCGAACACCATGGTCTTGGGGAATATTTCTGGGACTCAAATATTCCAAAACATCGACCGATACCGAGAAGCCTCAAGGGTGCCTTCGTTCCTCATTCTTGCCATTGAATCTCCAATCTACTTTGCAAACTCGACATACCTACAAGAAAGGATTCTAAGGTGGATTAGGGAAGACGAAGAGCGAATAAAAGCGACGAACGACAGTCCACTGAAATGTGTAATCCTAGACATGACAGCTGTAACATCCATAGACACAAGTGGTATAGAAGCAGTATGTGAAATTAGGAAGATCTTGATGCAAAAATCACTACAGTTTGTTCTTGCAAATCCAGTTGCAAACGTGATGGAAAAACTGTATAAATCAAAGGCCTTGGAGCAATTCGAGTTCAACGGTCTCTACCTCTCAGTCGGAGAAGCTGTGATGGACATTTCTTCTTTGTGGAAGAGGCAGCCATAA 1983 42.81 MGMNSNRVESLECRETVLRIPPEEMSAPPQQTEEIHKVCLPPSQTTLQKLKHKLSEVFFPDDPFYRFKNQTWFRKLLLGLQFLFPIFQWGPDYTLALFKSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSVLGSSRHLAVGPVSIASLVMGSMITEAVSFNEQPTLFLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIIHFTNKMQFIPVMSSVFHHKDEWSWQTIVLGSIFLLFLLGTRHISIKKPKLFWISAAAPLTSVILSTILVFLLRDKVPGISVIGHLPKGINPPSLNMLYFTGPQLALAIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNMAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNVVMSATVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAACRLWKVDKLDFVACVCSFFGVLFISVPLGLAIAVGVSIFKILLHVTRPNTMVLGNISGTQIFQNIDRYREASRVPSFLILAIESPIYFANSTYLQERILRWIREDEERIKATNDSPLKCVILDMTAVTSIDTSGIEAVCEIRKILMQKSLQFVLANPVANVMEKLYKSKALEQFEFNGLYLSVGEAVMDISSLWKRQP 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4222627 4227148 + CmoCh08G006470.1 Cmo08g00647 387380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00647 660 Gene3D STAS domain 509 654 IPR036513 -
Cmo08g00647 660 PANTHER SULFATE TRANSPORTER 3.4-RELATED 28 659 IPR030317 -
Cmo08g00647 660 SUPERFAMILY SpoIIaa-like 534 649 IPR036513 -
Cmo08g00647 660 Pfam STAS domain 530 648 IPR002645 -
Cmo08g00647 660 ProSiteProfiles STAS domain profile. 529 652 IPR002645 -
Cmo08g00647 660 PANTHER SULFATE TRANSPORTER 28 659 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo08g00647 660 Pfam Sulfate permease family 98 477 IPR011547 GO:0016021
Cmo08g00647 660 TIGRFAM sulP: sulfate permease 85 648 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo08g00647 660 CDD STAS_SulP_like_sulfate_transporter 530 645 - -
Cmo08g00647 660 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271|GO:0008272
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00647 Cmo17g00784 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00320 Cmo-Chr8:1996246 Cmo08g00647 Cmo-Chr8:4222627 0 dispersed
Cmo08g00647 Cmo-Chr8:4222627 Cmo17g01178 Cmo-Chr17:9479063 0 dispersed
Cmo04g00027 Cmo-Chr4:144410 Cmo08g00647 Cmo-Chr8:4222627 0 transposed
Cmo10g00643 Cmo-Chr10:2947910 Cmo08g00647 Cmo-Chr8:4222627 0 wgd
Cmo11g00595 Cmo-Chr11:2867566 Cmo08g00647 Cmo-Chr8:4222627 0 wgd
Cmo17g00784 Cmo-Chr17:7547412 Cmo08g00647 Cmo-Chr8:4222627 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00647 K17471 - csv:101203079 1183.7