Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00656 | ATGCGAATTTCTTCGTGTTTGTCTTTCTCCTACTTCAAATCTTTATTCTCTACTTTATCTTCTCCGTCTCGATCGTCCCGTTTCTACTCTTCTTCATCTCGGAACCAGAGCACTAAAACTCATTCAGTCCGGCCATCTCCAAGACCAGCTCTCGGGCCTAAGTCGCCGGCGTCTTATTATGCCTCTCTCCTCCAATCTTGCGGCGTTCAAAAGGCGATAGAGCCTGGAAAGCAGCTTCACGCTCGGATTTGGCAAATGGGTCTTGGATTCAACCCTCTTTTGGCTACTAAACTAATCAATCTTTACTGCGTCTGCAACTCTTTGATAAATGCTCATCTCTTGTTCGATAGAATTTCCAAACGGAGTCTCTTCCTTTGGAATGTTATGATACGAGGTTATGCTTGGAATGGACCATATGAGGTTGCAATTTCACTTTACTATCAAATGCAGGATTATGGATTTGTGCCCGATAAATTTACCTTTCCATTTGTGCTCAAAGCTTGCTCGGCTCTTTCTGCAATGGAAGAGGGAAAGAAGATTCACGAACATGTCATAGGCGCTGGATTGGAGACTGATGTGTTTGTGGGTGCAGCCCTGATTGATATGTATGCTAAGTGTGGTTGTGTAGTGAGTGCCCAACAGGTGTTTGATAAAATGGTTGAGAGAGATGTTGTGTGTTGGAACTCCATGCTTGCAGCTTATTCCCAAAATGGGCAACCAGATGATTGTCTTTCTCTTTGTAGGGAGATGGCGTATGCTGGAGTGAACCCCACCGAGGGGACGCTTGTCATCTCCATCTCAGCTTCAGCTGATAGTGTCCTTCTTCCTCAAGGGAAAGAGCTTCATGGTTATAGTTGGAGACATGGATTTGGGTTGAATGACAGGGTGAAAACTGCATTGGTGGATATGTATGCCAAGTGTGGCTCTGTACATGTTGCTAGGAGTCTGTTTGAGTTGTTGAAGGAGAAGAGGGTAGTCTCTTGGAACGCCATGATCTCTGGGTATGCAATGCATGGCCATGCTAATCAAGCTTTGGACTTGTTTAAGGAGATGAAAGAGATAGCTCTCCTTGATCATATAACTTTTGTTGGAGTTCTGGCTGCTTGCAGCCAGGTGGGTTGCTTAATCAAGGGGAAGATGTACTTCAGATCAATGTTAAGTGATTACATTATACGTCCTACTGTTCAACATTACACTTGTATGATTGATCTACTTGGTCATTGTGGTCACTTGGAAGAAGCTTACAACCTCATAATGGAAATGAGAGTAGAGCCAGATGCTGGTGTGTGGGGTGCCTTGCTTCACTCGTGCAAAATCCATGGTAATGTGGAGTTGGGCGAGCTAGCGTTAAGGAAGTTGGTTGAGCTCGAACCTGACAATGGCGGGAACTATGTGATTTTGTCGAACATGTACGCGCAAGCAGGTAAATGGGAAGGAGTTGCAAGACTAAGGGATGTCATGATGGATAGGGGGTTGAAGAAAAGTATAGCTTGTAGTTGGATAGAAGTGAGGAACAAAGTCCATGCCTTCTCGTCAGAAGATACTTCGCATCCCGAGTCTGAAGCAATCTATGCCGAGCTAAAACGGATAGGGAAGTTGATGAAAGAGGCTGGCTATGCACCACAAATCGGGTCGGTTTTCCACGATGTCGAAGACGATGAAAAGGCTGATATGGTGTGTGGTCACAGTGAAAGACTGGCCATTGCTTATGGACTCATCAGCACAGCTTTGGGAAGTAGGCTCTTGATTATCAAGAACCTTAGAGTTTGTGAGGACTGTCATGTTGCGATTAAGTTCATATCGAAGATCACGAAGAGAGAAATAAGTATTAGAGATGTTAATCGTTATCATCACTTCAAAGATGGACTTTGCTCCTGTGGTGATTTCTGGTTGATTTTGCTTCAAAACTTTCGAGACGGTTTTTCTGCAACATCTTTACAGTTTGAACATTTTGCGAGGGGGATCATATTGGAGAAGCAGGTGTTGACGGTGGCGAAGGCCGTGGAGGACAAGATTGATGACGATATTGCAGCGCTAGATCGTCTGGACCTTGACGATTTGGAGGCTTTGAGGGAGCGAAGATTGCAGCAGATGAAGAGGATGGCGGAGAAGCGTAGTCGATGGATCTCCCTTGGCCATGGCGAATACTCTGAGATTCCCGTCGAGAAGGACTTCTTCTCCGTAGTCAAGGCTAGTGATCGCGTGGTCTGCCACTTTTACCGTGAAAATTGGCCCTGCAAGGTTATGGACAAGCACTTGAATATCTTGGCAAAGCAACATATTGAGACTCGTTTCGTAAAGATCAATGCCGAGAAAAGTCCATTTCTGACTGAGAAGTTGAAGATCATTGTTCTTCCAACCCTTGCTCTTGTCAAAAATGCAAAAGTTGAAGACTATGTGGTGGGATTTGATGAGCTTGGTGGAACTGACGAATTCAGCACAGAGGAATTGGAAGAGAGTTGGGGTAAAGAATTTGTCGCCGGTGGCTTTGGTGGCATTGCTGGTATAGTCTCCGGCTACCCACTTGATACTCTTCGAATCAGGCAACAGCGATCCATTTCTGGTTCTGCTTTCAAAATCTTTCGTGATATTATTGGAAACCATGGCCCTGCTGGTCTTTACAGAGGCATGGCTGCTCCCTTGGCCTCTGTCACTTTCCAGAACGCTGCTGTGTTTCAAATCTACGCCGTTCTTTCTCGGGCATTCAACTTCTCCCAATCCAACGGTGACCCTCCGAGCTATAAGGCTGTGGCTCTTGGAGGATTTGTCACCGGTGCTCTTCAGAGCTTCATTCTGTCACCGGTGGAGCTGGTGAAAATCCACCTGCAATTGCAAAGTTCTTCTTCTAACAAAGGCCCTGTGAGCGTAGCCAAACGCATCTGCAAAACAGAAGGATTGAGAGGGGTTTACAGAGGACTTACCATAACCATGCTCAGAGATGCACCGGCACATGGCATCTATTTCTGGACATATGAGTTCATGAGAGAGCAGTTTCATCCTGGCTGCCGGAAGACCGGCCAAGAGAGTGTCAGCACAATGCTGTTCGCCGGAGGGCTCGCCGGAGTTGGCAGCTGGGTTGTCTGTTATCCCTTGGATGTGTTGAAGACAAGAATTCAGGGTGAGACACAAAGCTCATCTGGAAAGTATAATGGAATTGTTGATTGTCTTGGCAAGAGTGTGAGAGAAGAGGGTTACAGAGTGCTGTGGCGAGGGCTGGGGACTGCGGTGGCTAGAGCATTTGTGGTTAATGGGGCCGTCTTTGCTGCATATGAGATTACTTTGAGGTGTTTGTTTAGCAATCAAGCTCTCTGA | 3312 | 46.14 | MRISSCLSFSYFKSLFSTLSSPSRSSRFYSSSSRNQSTKTHSVRPSPRPALGPKSPASYYASLLQSCGVQKAIEPGKQLHARIWQMGLGFNPLLATKLINLYCVCNSLINAHLLFDRISKRSLFLWNVMIRGYAWNGPYEVAISLYYQMQDYGFVPDKFTFPFVLKACSALSAMEEGKKIHEHVIGAGLETDVFVGAALIDMYAKCGCVVSAQQVFDKMVERDVVCWNSMLAAYSQNGQPDDCLSLCREMAYAGVNPTEGTLVISISASADSVLLPQGKELHGYSWRHGFGLNDRVKTALVDMYAKCGSVHVARSLFELLKEKRVVSWNAMISGYAMHGHANQALDLFKEMKEIALLDHITFVGVLAACSQVGCLIKGKMYFRSMLSDYIIRPTVQHYTCMIDLLGHCGHLEEAYNLIMEMRVEPDAGVWGALLHSCKIHGNVELGELALRKLVELEPDNGGNYVILSNMYAQAGKWEGVARLRDVMMDRGLKKSIACSWIEVRNKVHAFSSEDTSHPESEAIYAELKRIGKLMKEAGYAPQIGSVFHDVEDDEKADMVCGHSERLAIAYGLISTALGSRLLIIKNLRVCEDCHVAIKFISKITKREISIRDVNRYHHFKDGLCSCGDFWLILLQNFRDGFSATSLQFEHFARGIILEKQVLTVAKAVEDKIDDDIAALDRLDLDDLEALRERRLQQMKRMAEKRSRWISLGHGEYSEIPVEKDFFSVVKASDRVVCHFYRENWPCKVMDKHLNILAKQHIETRFVKINAEKSPFLTEKLKIIVLPTLALVKNAKVEDYVVGFDELGGTDEFSTEELEESWGKEFVAGGFGGIAGIVSGYPLDTLRIRQQRSISGSAFKIFRDIIGNHGPAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNFSQSNGDPPSYKAVALGGFVTGALQSFILSPVELVKIHLQLQSSSSNKGPVSVAKRICKTEGLRGVYRGLTITMLRDAPAHGIYFWTYEFMREQFHPGCRKTGQESVSTMLFAGGLAGVGSWVVCYPLDVLKTRIQGETQSSSGKYNGIVDCLGKSVREEGYRVLWRGLGTAVARAFVVNGAVFAAYEITLRCLFSNQAL | 1103 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4258204 | 4266268 | + | CmoCh08G006560.1 | Cmo08g00656 | 387389 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00656 | 1103 | Pfam | Thioredoxin | 722 | 802 | IPR013766 | - | |
Cmo08g00656 | 1103 | Gene3D | Tetratricopeptide repeat domain | 49 | 166 | IPR011990 | GO:0005515 | |
Cmo08g00656 | 1103 | Gene3D | Tetratricopeptide repeat domain | 357 | 523 | IPR011990 | GO:0005515 | |
Cmo08g00656 | 1103 | Pfam | E motif | 440 | 502 | IPR046848 | - | |
Cmo08g00656 | 1103 | Pfam | PPR repeat family | 124 | 168 | IPR002885 | - | |
Cmo08g00656 | 1103 | Pfam | PPR repeat family | 325 | 369 | IPR002885 | - | |
Cmo08g00656 | 1103 | SUPERFAMILY | Mitochondrial carrier | 820 | 1091 | IPR023395 | - | |
Cmo08g00656 | 1103 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 122 | 156 | IPR002885 | - | |
Cmo08g00656 | 1103 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 324 | 358 | IPR002885 | - | |
Cmo08g00656 | 1103 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 819 | 901 | IPR018108 | - | |
Cmo08g00656 | 1103 | SUPERFAMILY | Thioredoxin-like | 656 | 819 | IPR036249 | - | |
Cmo08g00656 | 1103 | MobiDBLite | consensus disorder prediction | 21 | 44 | - | - | |
Cmo08g00656 | 1103 | Gene3D | Glutaredoxin | 695 | 823 | - | - | |
Cmo08g00656 | 1103 | Coils | Coil | 1100 | 1103 | - | - | |
Cmo08g00656 | 1103 | Gene3D | Tetratricopeptide repeat domain | 278 | 356 | IPR011990 | GO:0005515 | |
Cmo08g00656 | 1103 | Pfam | PPR repeat | 198 | 223 | IPR002885 | - | |
Cmo08g00656 | 1103 | Pfam | PPR repeat | 225 | 254 | IPR002885 | - | |
Cmo08g00656 | 1103 | Pfam | PPR repeat | 298 | 324 | IPR002885 | - | |
Cmo08g00656 | 1103 | Pfam | PPR repeat | 398 | 422 | IPR002885 | - | |
Cmo08g00656 | 1103 | TIGRFAM | PPR: pentatricopeptide repeat domain | 225 | 257 | IPR002885 | - | |
Cmo08g00656 | 1103 | TIGRFAM | PPR: pentatricopeptide repeat domain | 125 | 157 | IPR002885 | - | |
Cmo08g00656 | 1103 | TIGRFAM | PPR: pentatricopeptide repeat domain | 326 | 353 | IPR002885 | - | |
Cmo08g00656 | 1103 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 1008 | 1096 | IPR018108 | - | |
Cmo08g00656 | 1103 | Gene3D | Tetratricopeptide repeat domain | 167 | 275 | IPR011990 | GO:0005515 | |
Cmo08g00656 | 1103 | Pfam | Mitochondrial carrier protein | 918 | 998 | IPR018108 | - | |
Cmo08g00656 | 1103 | Pfam | Mitochondrial carrier protein | 1009 | 1100 | IPR018108 | - | |
Cmo08g00656 | 1103 | Pfam | Mitochondrial carrier protein | 820 | 903 | IPR018108 | - | |
Cmo08g00656 | 1103 | CDD | Phd_like_TxnDC9 | 712 | 819 | - | - | |
Cmo08g00656 | 1103 | Pfam | DYW family of nucleic acid deaminases | 538 | 630 | IPR032867 | GO:0008270 | |
Cmo08g00656 | 1103 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 223 | 257 | IPR002885 | - | |
Cmo08g00656 | 1103 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 4 | 624 | - | - | |
Cmo08g00656 | 1103 | PANTHER | - | 4 | 624 | - | - | |
Cmo08g00656 | 1103 | Coils | Coil | 684 | 707 | - | - | |
Cmo08g00656 | 1103 | MobiDBLite | consensus disorder prediction | 21 | 52 | - | - | |
Cmo08g00656 | 1103 | Gene3D | Mitochondrial carrier domain | 824 | 1102 | IPR023395 | - | |
Cmo08g00656 | 1103 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 912 | 997 | IPR018108 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g00116 | Cmo08g00656 | CCT | |
Cmo08g00656 | Cmo14g01344 | CCT | |
Cmo08g00656 | Cmo17g00772 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00656 | Cmo-Chr8:4258204 | Cmo16g00407 | Cmo-Chr16:1870820 | 3.63E-163 | dispersed | |
Cmo19g00255 | Cmo-Chr19:1855240 | Cmo08g00656 | Cmo-Chr8:4258204 | 6.23E-06 | dispersed | |
Cmo03g00749 | Cmo-Chr3:6319094 | Cmo08g00656 | Cmo-Chr8:4258204 | 6.74E-33 | transposed | |
Cmo04g00346 | Cmo-Chr4:1695404 | Cmo08g00656 | Cmo-Chr8:4258204 | 5.47E-30 | transposed | |
Cmo13g00104 | Cmo-Chr13:583061 | Cmo08g00656 | Cmo-Chr8:4258204 | 4.36E-165 | transposed | |
Cmo20g00617 | Cmo-Chr20:3024648 | Cmo08g00656 | Cmo-Chr8:4258204 | 2.41E-92 | transposed | |
Cmo06g00130 | Cmo-Chr6:715762 | Cmo08g00656 | Cmo-Chr8:4258204 | 5.94E-116 | transposed | |
Cmo01g00116 | Cmo-Chr1:510705 | Cmo08g00656 | Cmo-Chr8:4258204 | 8.98E-133 | wgd | |
Cmo14g01344 | Cmo-Chr14:11179878 | Cmo08g00656 | Cmo-Chr8:4258204 | 2.79E-131 | wgd | |
Cmo17g00772 | Cmo-Chr17:7488183 | Cmo08g00656 | Cmo-Chr8:4258204 | 7.68E-149 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00656 | - | - | cmo:103500579 | 1057.36 |