Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00656 ATGCGAATTTCTTCGTGTTTGTCTTTCTCCTACTTCAAATCTTTATTCTCTACTTTATCTTCTCCGTCTCGATCGTCCCGTTTCTACTCTTCTTCATCTCGGAACCAGAGCACTAAAACTCATTCAGTCCGGCCATCTCCAAGACCAGCTCTCGGGCCTAAGTCGCCGGCGTCTTATTATGCCTCTCTCCTCCAATCTTGCGGCGTTCAAAAGGCGATAGAGCCTGGAAAGCAGCTTCACGCTCGGATTTGGCAAATGGGTCTTGGATTCAACCCTCTTTTGGCTACTAAACTAATCAATCTTTACTGCGTCTGCAACTCTTTGATAAATGCTCATCTCTTGTTCGATAGAATTTCCAAACGGAGTCTCTTCCTTTGGAATGTTATGATACGAGGTTATGCTTGGAATGGACCATATGAGGTTGCAATTTCACTTTACTATCAAATGCAGGATTATGGATTTGTGCCCGATAAATTTACCTTTCCATTTGTGCTCAAAGCTTGCTCGGCTCTTTCTGCAATGGAAGAGGGAAAGAAGATTCACGAACATGTCATAGGCGCTGGATTGGAGACTGATGTGTTTGTGGGTGCAGCCCTGATTGATATGTATGCTAAGTGTGGTTGTGTAGTGAGTGCCCAACAGGTGTTTGATAAAATGGTTGAGAGAGATGTTGTGTGTTGGAACTCCATGCTTGCAGCTTATTCCCAAAATGGGCAACCAGATGATTGTCTTTCTCTTTGTAGGGAGATGGCGTATGCTGGAGTGAACCCCACCGAGGGGACGCTTGTCATCTCCATCTCAGCTTCAGCTGATAGTGTCCTTCTTCCTCAAGGGAAAGAGCTTCATGGTTATAGTTGGAGACATGGATTTGGGTTGAATGACAGGGTGAAAACTGCATTGGTGGATATGTATGCCAAGTGTGGCTCTGTACATGTTGCTAGGAGTCTGTTTGAGTTGTTGAAGGAGAAGAGGGTAGTCTCTTGGAACGCCATGATCTCTGGGTATGCAATGCATGGCCATGCTAATCAAGCTTTGGACTTGTTTAAGGAGATGAAAGAGATAGCTCTCCTTGATCATATAACTTTTGTTGGAGTTCTGGCTGCTTGCAGCCAGGTGGGTTGCTTAATCAAGGGGAAGATGTACTTCAGATCAATGTTAAGTGATTACATTATACGTCCTACTGTTCAACATTACACTTGTATGATTGATCTACTTGGTCATTGTGGTCACTTGGAAGAAGCTTACAACCTCATAATGGAAATGAGAGTAGAGCCAGATGCTGGTGTGTGGGGTGCCTTGCTTCACTCGTGCAAAATCCATGGTAATGTGGAGTTGGGCGAGCTAGCGTTAAGGAAGTTGGTTGAGCTCGAACCTGACAATGGCGGGAACTATGTGATTTTGTCGAACATGTACGCGCAAGCAGGTAAATGGGAAGGAGTTGCAAGACTAAGGGATGTCATGATGGATAGGGGGTTGAAGAAAAGTATAGCTTGTAGTTGGATAGAAGTGAGGAACAAAGTCCATGCCTTCTCGTCAGAAGATACTTCGCATCCCGAGTCTGAAGCAATCTATGCCGAGCTAAAACGGATAGGGAAGTTGATGAAAGAGGCTGGCTATGCACCACAAATCGGGTCGGTTTTCCACGATGTCGAAGACGATGAAAAGGCTGATATGGTGTGTGGTCACAGTGAAAGACTGGCCATTGCTTATGGACTCATCAGCACAGCTTTGGGAAGTAGGCTCTTGATTATCAAGAACCTTAGAGTTTGTGAGGACTGTCATGTTGCGATTAAGTTCATATCGAAGATCACGAAGAGAGAAATAAGTATTAGAGATGTTAATCGTTATCATCACTTCAAAGATGGACTTTGCTCCTGTGGTGATTTCTGGTTGATTTTGCTTCAAAACTTTCGAGACGGTTTTTCTGCAACATCTTTACAGTTTGAACATTTTGCGAGGGGGATCATATTGGAGAAGCAGGTGTTGACGGTGGCGAAGGCCGTGGAGGACAAGATTGATGACGATATTGCAGCGCTAGATCGTCTGGACCTTGACGATTTGGAGGCTTTGAGGGAGCGAAGATTGCAGCAGATGAAGAGGATGGCGGAGAAGCGTAGTCGATGGATCTCCCTTGGCCATGGCGAATACTCTGAGATTCCCGTCGAGAAGGACTTCTTCTCCGTAGTCAAGGCTAGTGATCGCGTGGTCTGCCACTTTTACCGTGAAAATTGGCCCTGCAAGGTTATGGACAAGCACTTGAATATCTTGGCAAAGCAACATATTGAGACTCGTTTCGTAAAGATCAATGCCGAGAAAAGTCCATTTCTGACTGAGAAGTTGAAGATCATTGTTCTTCCAACCCTTGCTCTTGTCAAAAATGCAAAAGTTGAAGACTATGTGGTGGGATTTGATGAGCTTGGTGGAACTGACGAATTCAGCACAGAGGAATTGGAAGAGAGTTGGGGTAAAGAATTTGTCGCCGGTGGCTTTGGTGGCATTGCTGGTATAGTCTCCGGCTACCCACTTGATACTCTTCGAATCAGGCAACAGCGATCCATTTCTGGTTCTGCTTTCAAAATCTTTCGTGATATTATTGGAAACCATGGCCCTGCTGGTCTTTACAGAGGCATGGCTGCTCCCTTGGCCTCTGTCACTTTCCAGAACGCTGCTGTGTTTCAAATCTACGCCGTTCTTTCTCGGGCATTCAACTTCTCCCAATCCAACGGTGACCCTCCGAGCTATAAGGCTGTGGCTCTTGGAGGATTTGTCACCGGTGCTCTTCAGAGCTTCATTCTGTCACCGGTGGAGCTGGTGAAAATCCACCTGCAATTGCAAAGTTCTTCTTCTAACAAAGGCCCTGTGAGCGTAGCCAAACGCATCTGCAAAACAGAAGGATTGAGAGGGGTTTACAGAGGACTTACCATAACCATGCTCAGAGATGCACCGGCACATGGCATCTATTTCTGGACATATGAGTTCATGAGAGAGCAGTTTCATCCTGGCTGCCGGAAGACCGGCCAAGAGAGTGTCAGCACAATGCTGTTCGCCGGAGGGCTCGCCGGAGTTGGCAGCTGGGTTGTCTGTTATCCCTTGGATGTGTTGAAGACAAGAATTCAGGGTGAGACACAAAGCTCATCTGGAAAGTATAATGGAATTGTTGATTGTCTTGGCAAGAGTGTGAGAGAAGAGGGTTACAGAGTGCTGTGGCGAGGGCTGGGGACTGCGGTGGCTAGAGCATTTGTGGTTAATGGGGCCGTCTTTGCTGCATATGAGATTACTTTGAGGTGTTTGTTTAGCAATCAAGCTCTCTGA 3312 46.14 MRISSCLSFSYFKSLFSTLSSPSRSSRFYSSSSRNQSTKTHSVRPSPRPALGPKSPASYYASLLQSCGVQKAIEPGKQLHARIWQMGLGFNPLLATKLINLYCVCNSLINAHLLFDRISKRSLFLWNVMIRGYAWNGPYEVAISLYYQMQDYGFVPDKFTFPFVLKACSALSAMEEGKKIHEHVIGAGLETDVFVGAALIDMYAKCGCVVSAQQVFDKMVERDVVCWNSMLAAYSQNGQPDDCLSLCREMAYAGVNPTEGTLVISISASADSVLLPQGKELHGYSWRHGFGLNDRVKTALVDMYAKCGSVHVARSLFELLKEKRVVSWNAMISGYAMHGHANQALDLFKEMKEIALLDHITFVGVLAACSQVGCLIKGKMYFRSMLSDYIIRPTVQHYTCMIDLLGHCGHLEEAYNLIMEMRVEPDAGVWGALLHSCKIHGNVELGELALRKLVELEPDNGGNYVILSNMYAQAGKWEGVARLRDVMMDRGLKKSIACSWIEVRNKVHAFSSEDTSHPESEAIYAELKRIGKLMKEAGYAPQIGSVFHDVEDDEKADMVCGHSERLAIAYGLISTALGSRLLIIKNLRVCEDCHVAIKFISKITKREISIRDVNRYHHFKDGLCSCGDFWLILLQNFRDGFSATSLQFEHFARGIILEKQVLTVAKAVEDKIDDDIAALDRLDLDDLEALRERRLQQMKRMAEKRSRWISLGHGEYSEIPVEKDFFSVVKASDRVVCHFYRENWPCKVMDKHLNILAKQHIETRFVKINAEKSPFLTEKLKIIVLPTLALVKNAKVEDYVVGFDELGGTDEFSTEELEESWGKEFVAGGFGGIAGIVSGYPLDTLRIRQQRSISGSAFKIFRDIIGNHGPAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNFSQSNGDPPSYKAVALGGFVTGALQSFILSPVELVKIHLQLQSSSSNKGPVSVAKRICKTEGLRGVYRGLTITMLRDAPAHGIYFWTYEFMREQFHPGCRKTGQESVSTMLFAGGLAGVGSWVVCYPLDVLKTRIQGETQSSSGKYNGIVDCLGKSVREEGYRVLWRGLGTAVARAFVVNGAVFAAYEITLRCLFSNQAL 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4258204 4266268 + CmoCh08G006560.1 Cmo08g00656 387389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00656 1103 Pfam Thioredoxin 722 802 IPR013766 -
Cmo08g00656 1103 Gene3D Tetratricopeptide repeat domain 49 166 IPR011990 GO:0005515
Cmo08g00656 1103 Gene3D Tetratricopeptide repeat domain 357 523 IPR011990 GO:0005515
Cmo08g00656 1103 Pfam E motif 440 502 IPR046848 -
Cmo08g00656 1103 Pfam PPR repeat family 124 168 IPR002885 -
Cmo08g00656 1103 Pfam PPR repeat family 325 369 IPR002885 -
Cmo08g00656 1103 SUPERFAMILY Mitochondrial carrier 820 1091 IPR023395 -
Cmo08g00656 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Cmo08g00656 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Cmo08g00656 1103 ProSiteProfiles Solute carrier (Solcar) repeat profile. 819 901 IPR018108 -
Cmo08g00656 1103 SUPERFAMILY Thioredoxin-like 656 819 IPR036249 -
Cmo08g00656 1103 MobiDBLite consensus disorder prediction 21 44 - -
Cmo08g00656 1103 Gene3D Glutaredoxin 695 823 - -
Cmo08g00656 1103 Coils Coil 1100 1103 - -
Cmo08g00656 1103 Gene3D Tetratricopeptide repeat domain 278 356 IPR011990 GO:0005515
Cmo08g00656 1103 Pfam PPR repeat 198 223 IPR002885 -
Cmo08g00656 1103 Pfam PPR repeat 225 254 IPR002885 -
Cmo08g00656 1103 Pfam PPR repeat 298 324 IPR002885 -
Cmo08g00656 1103 Pfam PPR repeat 398 422 IPR002885 -
Cmo08g00656 1103 TIGRFAM PPR: pentatricopeptide repeat domain 225 257 IPR002885 -
Cmo08g00656 1103 TIGRFAM PPR: pentatricopeptide repeat domain 125 157 IPR002885 -
Cmo08g00656 1103 TIGRFAM PPR: pentatricopeptide repeat domain 326 353 IPR002885 -
Cmo08g00656 1103 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1008 1096 IPR018108 -
Cmo08g00656 1103 Gene3D Tetratricopeptide repeat domain 167 275 IPR011990 GO:0005515
Cmo08g00656 1103 Pfam Mitochondrial carrier protein 918 998 IPR018108 -
Cmo08g00656 1103 Pfam Mitochondrial carrier protein 1009 1100 IPR018108 -
Cmo08g00656 1103 Pfam Mitochondrial carrier protein 820 903 IPR018108 -
Cmo08g00656 1103 CDD Phd_like_TxnDC9 712 819 - -
Cmo08g00656 1103 Pfam DYW family of nucleic acid deaminases 538 630 IPR032867 GO:0008270
Cmo08g00656 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Cmo08g00656 1103 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 624 - -
Cmo08g00656 1103 PANTHER - 4 624 - -
Cmo08g00656 1103 Coils Coil 684 707 - -
Cmo08g00656 1103 MobiDBLite consensus disorder prediction 21 52 - -
Cmo08g00656 1103 Gene3D Mitochondrial carrier domain 824 1102 IPR023395 -
Cmo08g00656 1103 ProSiteProfiles Solute carrier (Solcar) repeat profile. 912 997 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00116 Cmo08g00656 CCT
Cmo08g00656 Cmo14g01344 CCT
Cmo08g00656 Cmo17g00772 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00656 Cmo-Chr8:4258204 Cmo16g00407 Cmo-Chr16:1870820 3.63E-163 dispersed
Cmo19g00255 Cmo-Chr19:1855240 Cmo08g00656 Cmo-Chr8:4258204 6.23E-06 dispersed
Cmo03g00749 Cmo-Chr3:6319094 Cmo08g00656 Cmo-Chr8:4258204 6.74E-33 transposed
Cmo04g00346 Cmo-Chr4:1695404 Cmo08g00656 Cmo-Chr8:4258204 5.47E-30 transposed
Cmo13g00104 Cmo-Chr13:583061 Cmo08g00656 Cmo-Chr8:4258204 4.36E-165 transposed
Cmo20g00617 Cmo-Chr20:3024648 Cmo08g00656 Cmo-Chr8:4258204 2.41E-92 transposed
Cmo06g00130 Cmo-Chr6:715762 Cmo08g00656 Cmo-Chr8:4258204 5.94E-116 transposed
Cmo01g00116 Cmo-Chr1:510705 Cmo08g00656 Cmo-Chr8:4258204 8.98E-133 wgd
Cmo14g01344 Cmo-Chr14:11179878 Cmo08g00656 Cmo-Chr8:4258204 2.79E-131 wgd
Cmo17g00772 Cmo-Chr17:7488183 Cmo08g00656 Cmo-Chr8:4258204 7.68E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00656 - - cmo:103500579 1057.36