Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00682 ATGGCTTGGTTCACCATTGGAAGCTTCCAAGATTCCTTTAGCTTGCGCTCTTGCAAGGCGTATCTTGCTGAGTTCATCTCCACCTTGCTCTTCGTTTTCGCCGGCGTCGGTTCCGCCATTGCCTACGATAAAATAACATCCTCTGCAGCTTTGGACCCAGCGGGGCTGGTGGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTCTCTGTCGGAGCCAACATCTCCGGTGGCCATGTCAACCCAGCGGTGACATTCGGCCTTCTTCTTGGTGACCAAATCAGCCTAATTACGACCATATTTTACTGGATTGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTTACTGGCGGCCTGGCAGTTCCGGTCCACAGCGTGGCGGCCGGCATCGGAGCAGCGGAAGGAGTTGTGATGGAAATTGTCATCACATTCGGTCTGGTTTACACGGTCTATGCGACGGCGGCCGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCAATTGCCATCGGATTCATCGTCGGAGCAAACATTTTGGCAGCCGGACCGTTTTCCGGCGGATCGATGAACCCGGCCCGGTCATTTGGACCGGCGGTGGTCAGTGGGGACTTTCACGACAACTGGATTTACTGGGTTGGGCCACTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTATGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAGCGATTACTAA 747 54.08 MAWFTIGSFQDSFSLRSCKAYLAEFISTLLFVFAGVGSAIAYDKITSSAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGIGAAEGVVMEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPSDY 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4365247 4366658 - CmoCh08G006820.1 Cmo08g00682 387415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00682 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Cmo08g00682 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Cmo08g00682 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo08g00682 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cmo08g00682 248 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Cmo08g00682 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo08g00682 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo08g00682 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo08g00682 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo08g00682 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo08g00682 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo08g00682 248 PANTHER MIP PROTEIN 1 248 - -
Cmo08g00682 248 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo08g00682 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01579 Cmo-Chr2:9115713 Cmo08g00682 Cmo-Chr8:4365247 1.37E-126 dispersed
Cmo08g00682 Cmo-Chr8:4365247 Cmo14g00225 Cmo-Chr14:1039713 3.39E-95 dispersed
Cmo08g00682 Cmo-Chr8:4365247 Cmo03g01198 Cmo-Chr3:9354988 1.59E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00682 K09873 - csv:101218611 460.685