Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00686 ATGGCGAAGCCAAAGAGCTCATTCCCCACTACTCCACCACCACTTTCTTCTTCATTTCCGTCCACCCGACCGGTTTCCGGTGCCGGACCGGCTCAACCAGACCCACCGCCCCGCAAGAGAACCAGAGACTGCAACAGACATCCTGTTTTCAGAGGCGTACGGAAGAGAAGCTGGGGTAAATGGGTGTCGGAAATCCGCCAGCCGCGTAAGAAATCCCGAATTTGGCTCGGCACTTTTCCCACGCCGGAAATGGCAGCGCGTGCACACGACGCAGCTGCGTTGTGCATTAAAGGTGACTCGGCTATCCTCAATTACCCTGAACTCGCCTCATTTTTGCCCCGCCCCGCGTCGCTCATGCCGCACGATATACAAGCCGCCGCCGCTAAAGCGGCGGCGATGGCCACTGCATTGCCGTCGCCATCGGAGGAGGAGGAGCTTAGTGAGATTGTGGAGTTACCGAATATAGAAGACGATTTTGGTACTGAGTCACTGAACGAGTTCAAATTGGTTACTGAATCGTGGGAATGGTGGGAGTACGTGGCAATGCCGTTGGCGGCAGAATTCGGCAGCTGTTCTTTCTCCGACCAGTTGGCGGCGGAGGACAGTTTATTCCCCTGCAGCTTTTATGGTGCTCTGTGGGATTAA 645 55.66 MAKPKSSFPTTPPPLSSSFPSTRPVSGAGPAQPDPPPRKRTRDCNRHPVFRGVRKRSWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDAAALCIKGDSAILNYPELASFLPRPASLMPHDIQAAAAKAAAMATALPSPSEEEELSEIVELPNIEDDFGTESLNEFKLVTESWEWWEYVAMPLAAEFGSCSFSDQLAAEDSLFPCSFYGALWD 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4379264 4379908 + CmoCh08G006860.1 Cmo08g00686 387419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00686 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042 29 151 - -
Cmo08g00686 214 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Cmo08g00686 214 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Cmo08g00686 214 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Cmo08g00686 214 MobiDBLite consensus disorder prediction 1 48 - -
Cmo08g00686 214 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Cmo08g00686 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 151 - -
Cmo08g00686 214 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Cmo08g00686 214 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Cmo08g00686 214 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Cmo08g00686 214 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00686 Cmo-Chr8:4379264 Cmo09g00617 Cmo-Chr9:3084770 9.14E-51 dispersed
Cmo10g00689 Cmo-Chr10:3142161 Cmo08g00686 Cmo-Chr8:4379264 2.56E-48 wgd
Cmo11g00649 Cmo-Chr11:3103445 Cmo08g00686 Cmo-Chr8:4379264 9.07E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10256 PF00847 AP2 6.00E-15 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00686 K09286 - csv:101217361 290.041