Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00686 | ATGGCGAAGCCAAAGAGCTCATTCCCCACTACTCCACCACCACTTTCTTCTTCATTTCCGTCCACCCGACCGGTTTCCGGTGCCGGACCGGCTCAACCAGACCCACCGCCCCGCAAGAGAACCAGAGACTGCAACAGACATCCTGTTTTCAGAGGCGTACGGAAGAGAAGCTGGGGTAAATGGGTGTCGGAAATCCGCCAGCCGCGTAAGAAATCCCGAATTTGGCTCGGCACTTTTCCCACGCCGGAAATGGCAGCGCGTGCACACGACGCAGCTGCGTTGTGCATTAAAGGTGACTCGGCTATCCTCAATTACCCTGAACTCGCCTCATTTTTGCCCCGCCCCGCGTCGCTCATGCCGCACGATATACAAGCCGCCGCCGCTAAAGCGGCGGCGATGGCCACTGCATTGCCGTCGCCATCGGAGGAGGAGGAGCTTAGTGAGATTGTGGAGTTACCGAATATAGAAGACGATTTTGGTACTGAGTCACTGAACGAGTTCAAATTGGTTACTGAATCGTGGGAATGGTGGGAGTACGTGGCAATGCCGTTGGCGGCAGAATTCGGCAGCTGTTCTTTCTCCGACCAGTTGGCGGCGGAGGACAGTTTATTCCCCTGCAGCTTTTATGGTGCTCTGTGGGATTAA | 645 | 55.66 | MAKPKSSFPTTPPPLSSSFPSTRPVSGAGPAQPDPPPRKRTRDCNRHPVFRGVRKRSWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDAAALCIKGDSAILNYPELASFLPRPASLMPHDIQAAAAKAAAMATALPSPSEEEELSEIVELPNIEDDFGTESLNEFKLVTESWEWWEYVAMPLAAEFGSCSFSDQLAAEDSLFPCSFYGALWD | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4379264 | 4379908 | + | CmoCh08G006860.1 | Cmo08g00686 | 387419 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00686 | 214 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042 | 29 | 151 | - | - | |
Cmo08g00686 | 214 | ProSiteProfiles | AP2/ERF domain profile. | 49 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo08g00686 | 214 | CDD | AP2 | 50 | 108 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo08g00686 | 214 | Gene3D | AP2/ERF domain | 49 | 107 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo08g00686 | 214 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Cmo08g00686 | 214 | Pfam | AP2 domain | 48 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo08g00686 | 214 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 29 | 151 | - | - | |
Cmo08g00686 | 214 | PRINTS | Ethylene responsive element binding protein signature | 50 | 61 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo08g00686 | 214 | PRINTS | Ethylene responsive element binding protein signature | 72 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo08g00686 | 214 | SUPERFAMILY | DNA-binding domain | 49 | 106 | IPR016177 | GO:0003677 | |
Cmo08g00686 | 214 | SMART | rav1_2 | 49 | 112 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00686 | Cmo-Chr8:4379264 | Cmo09g00617 | Cmo-Chr9:3084770 | 9.14E-51 | dispersed | |
Cmo10g00689 | Cmo-Chr10:3142161 | Cmo08g00686 | Cmo-Chr8:4379264 | 2.56E-48 | wgd | |
Cmo11g00649 | Cmo-Chr11:3103445 | Cmo08g00686 | Cmo-Chr8:4379264 | 9.07E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10256 | PF00847 | AP2 | 6.00E-15 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00686 | K09286 | - | csv:101217361 | 290.041 |