Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00692 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAACGGCAAATACGTTCGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTCTATCATGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATCAGAGAGTGCCCCATTCTTTCTAATATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAAAATAGAAGATGTCGTGAAAAACAGAGGAAAGAATCGTCTCGGCTTCAAGCTGTGAATAGGAAGCTTACGGCCATGAATAAGCTTCTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCACAGCTGGTGTATGAGAATGGCTATTTCCGCCAGCATACTCAGAGTACGACGCTTGGAGCTAAAGACACAAATTGTGAACCGGTGGTAACTAGCGGTCAACACAATTTGACATCTCAGCATCCTCCTCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGTGGCTTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCATCTTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCAACAGCTAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACGTTGGCGCCTGCTAGGGACTTCTGGTTGTTACGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTTAAGAACACCCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTTAGAGCAGAGATGTTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCTATCATTCACATTGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTATTGCGTCCATTGTATGAATCATCCACTGTTCTTGCTCAAAAGATGACTATGGCGGCTCTACGCCAGTTGAGGCAGATAGCTCATGAAGTTTCACAGTCGAATGTAACAGGCTGGGGTAGACGCCCTGCAGCCTTACGTGCACTTGGTCAAAGGCTAACCCGGGGTTTTAACGAGGCACTTAATGGGTTTAACGACGAAGGGTGGTCTGTGATGGGAAATGATGGCATGGATGATGTAACTATTCTCATAAATTCATCTCCTGACAAGCTAATGGGATTGAACATTTCATTTGCAAATGGATTTTCTTCCATCAGTAATGCAGTTTTATGTGCTAGAGCATCCATGCTGTTGCAGAATGTGCCTCCTGCAATTCTACTGAGGTTCCTGCGGGAGCACAGATCAGAATGGGCAGATAACAACATTGATGCTTATTCTGCTGCTGCTGTTAAAGTCGGCCCTTGGAGCTTACCAGGGTCCAGAGTTGGAAGTTTTGCGAATCAAGTAATACTTCCACTAGCTCACACGATTGAGCACGAAGAACTTCTAGAAGTGATTAAACTGGAAGGCGTTGGCCATACACCTGAAGATGCAATGATCCCTAGAGAAATGTTTCTTCTACAACTCTGCAGTGGAATGGATGAAAACGCCATTGGCACATGTGCTGAGCTAATATTTGCTCCAATTGATGCTTCTTTTGCTGATGACGCACCGCTTTTACCCTCCGGGTTTCGGATCATACCACTTGATTCCGGAAAGGAAACATCCAGCCCAAATCGAACACTCGACCTTGCTTCTGCTCTTGAAATTGGGCCTGCTGGAAATAGAGCACCAAACGACGCTGTAAATTCTGGCTGTACGAGGTCTGTAATGACGATCGCCTTTGAATTTGCATTTGAGAGCCATATGCAAGAACATGTGGCATCAATGGCTCGACAATATGTTCGTAGTATTATATCGTCGGTCCAGAGGGTTGCATTAGCTCTCTCTCCTTCTCATTTAAGCTCTCATGGCGGACTAAGATCTCCCCTCGGTACTCCTGAAGCACAGACGCTTGCTCGTTGGATCTGCAACAGTTACAGGTGCTACTTGGGGGTGGAGCTATTAAAATCTGGTAACGAAGGAGGAGGTGAGCTTGTCCTGAAAACATTGTGGCATCACTCGGATGCGATCATGTGTTGCTCTCTAAAGGCATTGCCAGTGTTCACTTTTGCAAATCAGGCAGGCCTCGACATGCTCGAGACAACCTTAGTTGCACTACAAGACATAACATTGGAAAAAATATTCGACGACCATGGAAAAAAGACGCTCTGCTCCGAATTTCCACAGATAATGCAACAGGGATTTGCCTGTCTTCAAGGAGGCATATGCCTATCGAGCATGGGCCGACCTGTCTCATACGAAAGAGCTGTGGCTTGGAAGGTACTAAATGAAGAAGAAAATGCACACTGCATCTGTTTTATGTTTGTGAACTGGTCTTTTGTCTGA 2520 46.55 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTLGAKDTNCEPVVTSGQHNLTSQHPPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNVTGWGRRPAALRALGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILINSSPDKLMGLNISFANGFSSISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFANQVILPLAHTIEHEELLEVIKLEGVGHTPEDAMIPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRAPNDAVNSGCTRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHGGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4405129 4410067 + CmoCh08G006920.1 Cmo08g00692 387425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00692 839 ProSiteProfiles START domain profile. 152 380 IPR002913 GO:0008289
Cmo08g00692 839 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Cmo08g00692 839 Pfam START domain 162 370 IPR002913 GO:0008289
Cmo08g00692 839 Coils Coil 82 113 - -
Cmo08g00692 839 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Cmo08g00692 839 SUPERFAMILY Bet v1-like 161 372 - -
Cmo08g00692 839 SMART START_1 161 371 IPR002913 GO:0008289
Cmo08g00692 839 Pfam MEKHLA domain 695 838 IPR013978 -
Cmo08g00692 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 839 IPR044830 GO:0003700
Cmo08g00692 839 SMART HOX_1 14 80 IPR001356 GO:0003677
Cmo08g00692 839 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Cmo08g00692 839 CDD bZIP 69 108 - -
Cmo08g00692 839 CDD START_ArGLABRA2_like 156 372 - -
Cmo08g00692 839 Gene3D - 196 380 IPR023393 -
Cmo08g00692 839 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 839 - -
Cmo08g00692 839 CDD homeodomain 17 77 IPR001356 GO:0003677
Cmo08g00692 839 MobiDBLite consensus disorder prediction 138 157 - -
Cmo08g00692 839 Gene3D - 10 83 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00692 Cmo17g00742 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01442 Cmo-Chr3:10443739 Cmo08g00692 Cmo-Chr8:4405129 0 dispersed
Cmo07g00065 Cmo-Chr7:369276 Cmo08g00692 Cmo-Chr8:4405129 0 dispersed
Cmo08g00692 Cmo-Chr8:4405129 Cmo09g00613 Cmo-Chr9:3058447 0 dispersed
Cmo17g00742 Cmo-Chr17:7362109 Cmo08g00692 Cmo-Chr8:4405129 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10258 PF01852 START 2.80E-54 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00692 K09338 - csv:101213106 1657.5