Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00706 ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTGTTGGGAATCAAGAAAGACAAAGACCCATCTGGGAATTCCGATTCAAAACCAACGCCGGTGGTTTCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAACGCCGCCGCCAACTGTGGCTGTAGATTCGGCTTGGTTCAGTTCTTACATTTCTGATTCGGAGAAAGAGCAGAACAAGCACGCAATTGCAGTGGCGGCTGCTACTGCTGCTGCTGCTGATGCTGCCGTCGCCGCGGCTCAGGCGGCGGTCGCCGTTGTCCGGCTGACAAGCCAAAGAAGAGGTCCTCTGTATACTACTGGAAGAGATAGATGGGCTGCTGTCAAGATTCAAACAGTCTTTAAAGGCTATTTGGCTCGAAAAGCTCTACGAGCTCTCAAGGGACTCGTTAAGTTGCAGGCTGTCGTTCGAGGATTTCTCGTCCGAAAACGAGCTGCTGCAACTCTTCACAGTATGCAGGCACTTTTTAGAGCTCAAACTGCCCTTAGAACTCAAAGAGCTCGTCGATCTTTCAATAAAGAAAATAGGTTTATTCCCGAGATTCGGCCTCGGAAATCTGCGGAACGTTTGGATGAAACAAGAAGTGAATTTCATAGTAAGAGATTGTCTATAGCATCATCTTATGAAACCTCCATCAACTCATTGGACGAGAGCCCAAAAATCGTCGAAATCGACACTTACCGAACCCGATCAAAGTCTCGTAGGTACATCTCTACATTGTCCGAATATGGAGGAGACGAAGCAGCACCTCTTCAAGCAATCACTTCGCCATTGCCATATTCGAATCGACCTCGCACTTTTACGCTTGATTGTCACAATGTGCATCGAGATTTCGAATGGTGCTTGATGGGCGAAGACTGCAAGTTCCCTACAGCTCACAGCACGCCTCGGCTATCGAATTCATTCGCCTCAACGAACATGTCAGTTACCCCATCAAAGAGTGTCTGCGGCGACAGCTTCTTTAGGCCTTACATGAACTGCCCGAATTATATGGCGAACACTCAATCGTTTAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAACAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTGTCGTTGAATGAAATAATGGCAGCAAGAAACAGCTTAAGCAGTGTAAGAATGCAGAGACCAAGCAACCAAACTCTGCAAGAACATGAAGAACATGAAGAACAGGATGAAGATGAAGAAACATCATATGATTTTTGA 1266 47.16 MGKATRWLKGLLGIKKDKDPSGNSDSKPTPVVSDRKEKKRWSFAKSGRDSGQTPPPTVAVDSAWFSSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQRRGPLYTTGRDRWAAVKIQTVFKGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSAERLDETRSEFHSKRLSIASSYETSINSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDCHNVHRDFEWCLMGEDCKFPTAHSTPRLSNSFASTNMSVTPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVRMQRPSNQTLQEHEEHEEQDEDEETSYDF 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4464506 4466107 + CmoCh08G007060.1 Cmo08g00706 387439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00706 421 MobiDBLite consensus disorder prediction 30 45 - -
Cmo08g00706 421 MobiDBLite consensus disorder prediction 357 421 - -
Cmo08g00706 421 MobiDBLite consensus disorder prediction 407 421 - -
Cmo08g00706 421 PANTHER IQ-DOMAIN 5-RELATED 1 399 - -
Cmo08g00706 421 MobiDBLite consensus disorder prediction 12 56 - -
Cmo08g00706 421 SMART iq_5 120 142 IPR000048 GO:0005515
Cmo08g00706 421 SMART iq_5 143 164 IPR000048 GO:0005515
Cmo08g00706 421 MobiDBLite consensus disorder prediction 383 399 - -
Cmo08g00706 421 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515
Cmo08g00706 421 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515
Cmo08g00706 421 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Cmo08g00706 421 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 399 - -
Cmo08g00706 421 Pfam Protein of unknown function (DUF4005) 313 408 IPR025064 -
Cmo08g00706 421 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00706 - - - csv:101204536 590.497
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00094 Cmo08g00706 CCT
Cmo08g00706 Cmo14g01322 CCT
Cmo01g00094 Cmo08g00706 ECH
Cmo08g00706 Cmo14g01322 ECH
Cmo08g00706 Cmo17g00728 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01388 Cmo-Chr6:10183854 Cmo08g00706 Cmo-Chr8:4464506 2.80E-47 dispersed
Cmo08g00706 Cmo-Chr8:4464506 Cmo17g00728 Cmo-Chr17:7275951 0 dispersed
Cmo08g00705 Cmo-Chr8:4462352 Cmo08g00706 Cmo-Chr8:4464506 1.50E-06 tandem
Cmo01g00094 Cmo-Chr1:424535 Cmo08g00706 Cmo-Chr8:4464506 4.07E-81 wgd
Cmo10g00702 Cmo-Chr10:3221407 Cmo08g00706 Cmo-Chr8:4464506 7.23E-119 wgd
Cmo11g00664 Cmo-Chr11:3196822 Cmo08g00706 Cmo-Chr8:4464506 1.03E-121 wgd
Cmo14g01322 Cmo-Chr14:11042130 Cmo08g00706 Cmo-Chr8:4464506 5.70E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g268 Blo05g00074 Blo06g00714 . . Bpe06g00755 Bpe10g00674 . Bma13g01244 Cmo08g00706 Cmo17g00728 Cma01g00093 Cma14g01288 Car01g00077 Car14g01140 . Cpe12g00644 Cpe17g00525 . . . . . . . Cla07g01269 Cam07g1230 Cec07g1451 Cco07g1412 Clacu07g1334 Cmu07g1313 Cre07g1696 Cone20ag1278 Cone17ag0129 Cone16ag0724 Cone2ag0310 Lsi02g02822 Csa07g02270 Chy04g00953 Cme01g02724 . Blo10g00997 . . . Bpe09g00007 . Bma15g00349 . Cmo01g00094 Cmo14g01322 Cma08g00741 Cma17g00759 Car08g00629 Car17g00704 Cpe02g01697 Cpe03g01092 Bhi09g00470 . . . . . . Cla09g00021 Cam09g0023 Cec09g0022 Cco09g0024 Clacu09g0028 . Cre09g0022 Lsi07g00528 Csa03g02352 Chy01g02095 Cme04g01144
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01429 CCT,ECH 99 267 IQD Protein Family AT3G09710 54.7 1.4e-46 184.9
Cmo18g00887 . 102 270 IQD Protein Family AT3G09710 51.4 3.3e-40 163.7
Cmo06g00353 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.1e-62 236.1
Cmo04g02721 CCT,CST,ECH 1 478 IQD Protein Family AT3G52290 54.1 4.1e-98 355.9
Cmo15g00445 CCT,CST,ECH 1 452 IQD Protein Family AT3G52290 50.4 1.7e-88 323.9
Cmo11g00931 CST 1 412 IQD Protein Family AT3G22190 57.2 4.2e-95 345.9
Cmo10g00895 CST 23 388 IQD Protein Family AT3G22190 57.9 8.4e-88 321.6
Cmo01g01783 . 1 434 IQD Protein Family AT2G26180 59.7 6.1e-115 411.8
Cmo09g00343 . 238 629 IQD Protein Family AT2G26180 58.9 2.3e-98 356.7
Cmo07g00202 . 1 279 IQD Protein Family AT2G33990 51.6 6.3e-65 245.0
Cmo16g00447 . 109 292 IQD Protein Family AT2G33990 53.5 8.2e-49 191.4
Cmo07g00202 . 1 253 IQD Protein Family AT3G15050 51.4 7.8e-60 228.0
Cmo16g00447 . 65 285 IQD Protein Family AT3G15050 52.4 1.1e-53 207.6
Cmo15g00857 . 123 458 IQD Protein Family AT5G13460 52.4 1.3e-75 281.2
Cmo06g00970 . 1 500 IQD Protein Family AT4G00820 56.1 1.2e-126 451.1
Cmo06g00970 . 1 500 IQD Protein Family AT1G01110 52.3 1.6e-123 440.7
Cmo08g00706 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.3 3.2e-73 273.1
Cmo11g00664 CST 1 382 IQD Protein Family AT3G16490 51.6 8.9e-68 255.0
Cmo10g00702 CST 1 376 IQD Protein Family AT3G16490 51.5 7.8e-64 241.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00706 Cmo_Chr08 FPKM 18.507338 16.605108 66.166618 62.806931 570.476868 608.536011 552.379639 53.203663 53.721611 43.497593