Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00706 ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTGTTGGGAATCAAGAAAGACAAAGACCCATCTGGGAATTCCGATTCAAAACCAACGCCGGTGGTTTCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAACGCCGCCGCCAACTGTGGCTGTAGATTCGGCTTGGTTCAGTTCTTACATTTCTGATTCGGAGAAAGAGCAGAACAAGCACGCAATTGCAGTGGCGGCTGCTACTGCTGCTGCTGCTGATGCTGCCGTCGCCGCGGCTCAGGCGGCGGTCGCCGTTGTCCGGCTGACAAGCCAAAGAAGAGGTCCTCTGTATACTACTGGAAGAGATAGATGGGCTGCTGTCAAGATTCAAACAGTCTTTAAAGGCTATTTGGCTCGAAAAGCTCTACGAGCTCTCAAGGGACTCGTTAAGTTGCAGGCTGTCGTTCGAGGATTTCTCGTCCGAAAACGAGCTGCTGCAACTCTTCACAGTATGCAGGCACTTTTTAGAGCTCAAACTGCCCTTAGAACTCAAAGAGCTCGTCGATCTTTCAATAAAGAAAATAGGTTTATTCCCGAGATTCGGCCTCGGAAATCTGCGGAACGTTTGGATGAAACAAGAAGTGAATTTCATAGTAAGAGATTGTCTATAGCATCATCTTATGAAACCTCCATCAACTCATTGGACGAGAGCCCAAAAATCGTCGAAATCGACACTTACCGAACCCGATCAAAGTCTCGTAGGTACATCTCTACATTGTCCGAATATGGAGGAGACGAAGCAGCACCTCTTCAAGCAATCACTTCGCCATTGCCATATTCGAATCGACCTCGCACTTTTACGCTTGATTGTCACAATGTGCATCGAGATTTCGAATGGTGCTTGATGGGCGAAGACTGCAAGTTCCCTACAGCTCACAGCACGCCTCGGCTATCGAATTCATTCGCCTCAACGAACATGTCAGTTACCCCATCAAAGAGTGTCTGCGGCGACAGCTTCTTTAGGCCTTACATGAACTGCCCGAATTATATGGCGAACACTCAATCGTTTAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAACAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTGTCGTTGAATGAAATAATGGCAGCAAGAAACAGCTTAAGCAGTGTAAGAATGCAGAGACCAAGCAACCAAACTCTGCAAGAACATGAAGAACATGAAGAACAGGATGAAGATGAAGAAACATCATATGATTTTTGA 1266 47.16 MGKATRWLKGLLGIKKDKDPSGNSDSKPTPVVSDRKEKKRWSFAKSGRDSGQTPPPTVAVDSAWFSSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQRRGPLYTTGRDRWAAVKIQTVFKGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSAERLDETRSEFHSKRLSIASSYETSINSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDCHNVHRDFEWCLMGEDCKFPTAHSTPRLSNSFASTNMSVTPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVRMQRPSNQTLQEHEEHEEQDEDEETSYDF 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4464506 4466107 + CmoCh08G007060.1 Cmo08g00706 387439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00706 421 MobiDBLite consensus disorder prediction 30 45 - -
Cmo08g00706 421 MobiDBLite consensus disorder prediction 357 421 - -
Cmo08g00706 421 MobiDBLite consensus disorder prediction 407 421 - -
Cmo08g00706 421 PANTHER IQ-DOMAIN 5-RELATED 1 399 - -
Cmo08g00706 421 MobiDBLite consensus disorder prediction 12 56 - -
Cmo08g00706 421 SMART iq_5 120 142 IPR000048 GO:0005515
Cmo08g00706 421 SMART iq_5 143 164 IPR000048 GO:0005515
Cmo08g00706 421 MobiDBLite consensus disorder prediction 383 399 - -
Cmo08g00706 421 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515
Cmo08g00706 421 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515
Cmo08g00706 421 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Cmo08g00706 421 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 399 - -
Cmo08g00706 421 Pfam Protein of unknown function (DUF4005) 313 408 IPR025064 -
Cmo08g00706 421 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00094 Cmo08g00706 CCT
Cmo08g00706 Cmo14g01322 CCT
Cmo01g00094 Cmo08g00706 ECH
Cmo08g00706 Cmo14g01322 ECH
Cmo08g00706 Cmo17g00728 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01388 Cmo-Chr6:10183854 Cmo08g00706 Cmo-Chr8:4464506 2.80E-47 dispersed
Cmo08g00706 Cmo-Chr8:4464506 Cmo17g00728 Cmo-Chr17:7275951 0 dispersed
Cmo08g00705 Cmo-Chr8:4462352 Cmo08g00706 Cmo-Chr8:4464506 1.50E-06 tandem
Cmo01g00094 Cmo-Chr1:424535 Cmo08g00706 Cmo-Chr8:4464506 4.07E-81 wgd
Cmo10g00702 Cmo-Chr10:3221407 Cmo08g00706 Cmo-Chr8:4464506 7.23E-119 wgd
Cmo11g00664 Cmo-Chr11:3196822 Cmo08g00706 Cmo-Chr8:4464506 1.03E-121 wgd
Cmo14g01322 Cmo-Chr14:11042130 Cmo08g00706 Cmo-Chr8:4464506 5.70E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00706 - - csv:101204536 590.497