Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00718 ATGCAAATGCGTTACCAGAAAGAGCTCGAGCTCGAGCCCGAGCCCGACAGATCGGTCTTTTCGGAAGTTGAAGTAGTAGTAATGGATTATTCGAACCGGGATGGATACGGGTCGAGAGTTGCAACGACAAACATGACGTCGCCGGTGTCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAATTCAAATTCTCACTTCTTCAACTCAGTTCAAGATCTCCCAATCAGCCCTCCATTGACAAGCTTTGCAACATCCAAAGACATGGATGCTATTGCGCTCTATGGATTCGACGACGGTAAATCGACGTCGGTTACACCGTGCTCTCTCAAGTCATTGGACTGCTTGCTTTCAGCTACAAATAGCAACACAGACACATCAGTTGAAGACAATGATGGATCAGTGTCAATGATCTTAACAGATTACACAAATTTATGGAACTTTGGAAGCAATGCAGCAACTACAAAGAGAACCCATCAAGAATCTACAGAGTACTCTGTTTTTTCCAACACCATCAAGAATCTCTCTGATTCAACTTCAAACAGTGGAGGGTTTAGGATCATAACAGATCAAAATCAACCAAAATCAAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAACTTCCAGCAATCATGTTCATCAGGATCATCATGTATTGATCAAGAACCTGACCCAGAAGCCATAGCACAAATGAAGGAAATGATATACAGAGCAGCAGCTTTGAGGCCAGTGAATTTGGGGGTAGAAGGGATAGAAAAGCCCAAAAGGAAGAACGTGAGGATCTCAACAGACCCACAAACAGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAAAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGGAACAAGATGGATACTGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGATTGAATCTTTGAACTGCCCTTCAACTAGCTTAGCCTTTTCTTTCAACCCATCTTTTCCCATACAATCATCTTCATCATTATCCCATAACCAATATCCCCAAAACTGA 1104 42.21 MQMRYQKELELEPEPDRSVFSEVEVVVMDYSNRDGYGSRVATTNMTSPVSFWSNYQQGVEERFMISNSNSHFFNSVQDLPISPPLTSFATSKDMDAIALYGFDDGKSTSVTPCSLKSLDCLLSATNSNTDTSVEDNDGSVSMILTDYTNLWNFGSNAATTKRTHQESTEYSVFSNTIKNLSDSTSNSGGFRIITDQNQPKSKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAALRPVNLGVEGIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGNKMDTASMLDEAANYLKFLKSQIKALENLGQKIESLNCPSTSLAFSFNPSFPIQSSSSLSHNQYPQN 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4523831 4526864 - CmoCh08G007180.1 Cmo08g00718 387451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00718 367 Pfam Helix-loop-helix DNA-binding domain 280 319 IPR011598 GO:0046983
Cmo08g00718 367 PANTHER TRANSCRIPTION FACTOR BHLH87 50 363 - -
Cmo08g00718 367 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 50 363 IPR045843 GO:0003700|GO:0006355
Cmo08g00718 367 MobiDBLite consensus disorder prediction 184 231 - -
Cmo08g00718 367 Coils Coil 309 336 - -
Cmo08g00718 367 MobiDBLite consensus disorder prediction 208 229 - -
Cmo08g00718 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 331 IPR036638 GO:0046983
Cmo08g00718 367 SMART finulus 276 325 IPR011598 GO:0046983
Cmo08g00718 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Cmo08g00718 367 Gene3D - 275 338 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00718 Cmo-Chr8:4523831 Cmo09g00229 Cmo-Chr9:1062565 8.49E-31 dispersed
Cmo01g00080 Cmo-Chr1:369950 Cmo08g00718 Cmo-Chr8:4523831 7.09E-39 wgd
Cmo14g01314 Cmo-Chr14:10989147 Cmo08g00718 Cmo-Chr8:4523831 6.67E-40 wgd
Cmo17g00717 Cmo-Chr17:7213266 Cmo08g00718 Cmo-Chr8:4523831 3.37E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10260 PF00010 HLH 7.00E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00718 - - csv:101207907 477.633