Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00740 ATGACCTCCATCCACCACCACCACCCTCCTCCCCACCACCACCACCTCTCCAAATCCACCTCCGCCGTCTCCTCCTCCTCCTCCACCGCCACCACCCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTCGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATATTCCAATCCGACGTCCGATCCCTCGATCCGGTCGGCGGATGTTACCGCATCATTCGCGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAGCTCGAGATCGTGCTTCATCAATTGGCGATCTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCGATTCTGGACGCGGATCATCCTATGAGTGGAGGATACGCCGGAATCGAGCACCAATTTGTGGAGGAAGGATTTGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGAGGTTTGGGGGATTCAGGCTTCCCAAATCTCGCCCTGTTCTTCCTTCAAATCCTCTGTTCATGATTTTGATCATGTCGATATTCATTATCATCATCAACAATTTGTTAGGTTTCATCCGGATCATCATCAGTTTCTTCATAAGAGTGAGGTAGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGATTCAGAGCCAATGCAAAATGACCAAGATGGAGAGGTTAAAGGTGCACGGTTGAGTGCGGTGAAAAAAGGAAGAGATCTGATGAAAACTGCTGAAATTTCCTCTGCGATTGCGACTCTGATGGGGTTTCGATCGCTGTTTCTGCTTTTTGGGATTTGTTTTGCTGTTCGTTCTTGCTCTGTCTGTGAATCTTCAGTTATCGTCCCGAACAGGCGAAGCCAAGCGCGTTCTTCGCTCACAGGTGACATCAAAATTATCGTCCCGAACGGTCGAAGCGAAGTGCGTTCTTCGCTCACAGCGACTCGATTAGATGATTCGAGTAGAGCTCCTAGCATTGCACTTCCACCTACCGTACCTGCTAAGAAATGGGGGCACGGTCATGAATTTCGCCATTCAAGAAGGAAGTTTAGAAACAATGCTCCACGGCGTGGTTATCGCGCATCGACTCCGGAGAATGGCCAGCAAGGCCGTGCTGCTGTCTCTCCAATTCAATCACCATTACCATCTGCAACGAGAGGAAGGTCGCCGAGACCTGCGCCATCGCCAATGATTCCACCGAACCACTATTATATGCCCATTCCTGCTCCTACAATTTCTCCTATGGGTTCTTACAAGAAGAGGAAGAAGAGCATGCCACCATCACAAGTTATGATGCTACCACCCCCACCTCCTAATGGGGATTGTGTGATATCATGTACCGAGCCACTGACCTATACACCTCCCGGGACGTTGTGTGGTTGCGTGTGGCCAATTCAAGTCAAAATCAGTCTTGATGTTGCAATATACACGTTTTTCCCTCTGGTTTCGGAGCTGGCAGAGGAAATTGCAGACAGTATTGGTCTGAACCATAGCCAAGTTCGAATTATGGGAGCTGATGCTGCTAGTCAGCAGTTAGAAAAAACGACTGTCCTCATCAACTTGGTTCCGAGAGGACCGAAATTCAATGATACCATGGCCTTTTCGATATATCAGAAGTTTTGGCACAGAAAAATATCCATTAACGCTTCGTTATTTGGTCGATATCAAGTCCTGAATGTCAAATATCCAGGTCTTCCGCCATCTCCTCCGTTACCTCCTTCAGGTACTTCATCCATTAACGATGGCTTGAACACGAGCAATACTAATATTGGAAATGCTATAAAACCTTTGGGAGTCGACGTGCCAAGAAGAAGGAAAGAAGGGCTTAGCGGAAACATGATCGCCGTGATTACTATATCGTCGTTCACTGCCTTTGTTATGTGTGTTGGACTTGCTTGGCTTTGCCTGTTGAGATGCAGAGTGTTTGCACATCAGGCAGCACAAGCTCCACAAAACTTGATAGCCTCACCTACAAAACCATCAGGCCCTGCTGGATTAATGATGGCTGGAACTGAACCTGGTTCTTCATCCCTGCCTCTCGATGCCGATCCTATGATGTATATAGGAGCTGCAAAGAACTTCACCTTGAAAGATATGAAGAAAGCTACCGACAACTTCGACGTTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTTTACAGTGGCAGTTTGGATGATGGAAGGGAAGTGGCTGTGAAGGTTCTCAAACGACATAATCAACACGGTATTCGGGAATTCTTGGCCGAAGTCGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAATTGATTGGTATCTGTACAGAAGATCAGATTCGCTGCCTTGTTTATGAATTGGTTCCGAATGGAAGCGTCGAATCGCATTTACATGGCATTGACAAGTTAACTGGCCCTCTTGACTGGGATGCTCGGATGAAGATTGCCCTCGGTGCTGCTCGTGGCCTAGCTTATTTGCACGAAGACTCTAATCCTCGAGTTATTCATCGAGATTTCAAAGCTAGCAACATCTTGTTGGAATATGACTTTACAGCTAAAGTTTCAGATTTTGGATTAGCTAGAACTGCACTAGAGGAAGGAAACAAGCACATCTCAACCCATGTGATGGGAACTTTTGGTTATCTAGCTCCGGAGTATGCAATGACGGGCCACCTTCTTGTAAAGAGCGATGTCTACAGCTATGGTGTTGTCCTTCTCGAGCTACTTACGGGAAGAAAACCAGTTGACTTGTTGCTTCCACCGGGGCAAGAAAATCTTGTTGCTTGGGCTCGACCGCTTCTAACGAGCAAGGAGGGGTTAGATGTAATTACAGACCCAGCTATTAAGTCTGATATCTCTATTGATAGCTTGGCCAGAGTAGCTGCAATTGCTTCTATGTGTGTGCAACCTGAAGTGTCTCACAGACCATTTATGGGCGAGGTTGTTCAAGCTCTAAAGCTTGTTTGCAATGAGTTCGAAGAGACAAATGAGGCAGGTTCACGAAGTTACAGCCGAGACGAACTTCTAAGTTACATGGATAGTAAATTTGGAGGAATTTCAGGGGAAATACTAAACGCTACCGACACCTTGCACCCGTTTCCTTCAGAAAAAGAGACGAATGTAGGACTATCGGCATCGGATTTAATCAGCGCATCTGCAAGATTTGAAGGACAGGAATTAGTTTCCTTGAGATGGCATACATCAAACTCAGAACCCTTGAAAATGGGAAGGAAGAGGCAGTTCTGGCAGAAACTAAGAAGTTTATCACGAGGCAGCATCAGTGAACATGGCTTTTCTTCTAAATTTTGGCCTGGATTTCGTTAG 3426 46.99 MTSIHHHHPPPHHHHLSKSTSAVSSSSSTATTQACAACKYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADHPMSGGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQASQISPCSSFKSSVHDFDHVDIHYHHQQFVRFHPDHHQFLHKSEVEAGMVEIDNVILKEDSEPMQNDQDGEVKGARLSAVKKGRDLMKTAEISSAIATLMGFRSLFLLFGICFAVRSCSVCESSVIVPNRRSQARSSLTGDIKIIVPNGRSEVRSSLTATRLDDSSRAPSIALPPTVPAKKWGHGHEFRHSRRKFRNNAPRRGYRASTPENGQQGRAAVSPIQSPLPSATRGRSPRPAPSPMIPPNHYYMPIPAPTISPMGSYKKRKKSMPPSQVMMLPPPPPNGDCVISCTEPLTYTPPGTLCGCVWPIQVKISLDVAIYTFFPLVSELAEEIADSIGLNHSQVRIMGADAASQQLEKTTVLINLVPRGPKFNDTMAFSIYQKFWHRKISINASLFGRYQVLNVKYPGLPPSPPLPPSGTSSINDGLNTSNTNIGNAIKPLGVDVPRRRKEGLSGNMIAVITISSFTAFVMCVGLAWLCLLRCRVFAHQAAQAPQNLIASPTKPSGPAGLMMAGTEPGSSSLPLDADPMMYIGAAKNFTLKDMKKATDNFDVARILGEGGFGIVYSGSLDDGREVAVKVLKRHNQHGIREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPNGSVESHLHGIDKLTGPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEYDFTAKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLLLPPGQENLVAWARPLLTSKEGLDVITDPAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFEETNEAGSRSYSRDELLSYMDSKFGGISGEILNATDTLHPFPSEKETNVGLSASDLISASARFEGQELVSLRWHTSNSEPLKMGRKRQFWQKLRSLSRGSISEHGFSSKFWPGFR 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4690171 4699428 - CmoCh08G007400.1 Cmo08g00740 387473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00740 1141 MobiDBLite consensus disorder prediction 380 395 - -
Cmo08g00740 1141 ProSitePatterns Protein kinases ATP-binding region signature. 752 774 IPR017441 GO:0005524
Cmo08g00740 1141 Gene3D Phosphorylase Kinase; domain 1 717 821 - -
Cmo08g00740 1141 ProSitePatterns Serine/Threonine protein kinases active-site signature. 868 880 IPR008271 GO:0004672|GO:0006468
Cmo08g00740 1141 MobiDBLite consensus disorder prediction 351 442 - -
Cmo08g00740 1141 MobiDBLite consensus disorder prediction 1 15 - -
Cmo08g00740 1141 MobiDBLite consensus disorder prediction 402 425 - -
Cmo08g00740 1141 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Cmo08g00740 1141 MobiDBLite consensus disorder prediction 1 23 - -
Cmo08g00740 1141 CDD STKc_IRAK 752 1020 - -
Cmo08g00740 1141 ProSiteProfiles Protein kinase domain profile. 746 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00740 1141 Pfam Lateral organ boundaries (LOB) domain 34 129 IPR004883 -
Cmo08g00740 1141 PANTHER OS01G0750732 PROTEIN 352 1140 - -
Cmo08g00740 1141 Pfam Protein tyrosine and serine/threonine kinase 749 1019 IPR001245 GO:0004672|GO:0006468
Cmo08g00740 1141 SUPERFAMILY Protein kinase-like (PK-like) 726 1019 IPR011009 -
Cmo08g00740 1141 MobiDBLite consensus disorder prediction 427 442 - -
Cmo08g00740 1141 PANTHER OS01G0750732 PROTEIN 352 1140 - -
Cmo08g00740 1141 Gene3D Transferase(Phosphotransferase) domain 1 822 1042 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00740 Cmo-Chr8:4690171 Cmo19g00148 Cmo-Chr19:815151 0 dispersed
Cmo05g00101 Cmo-Chr5:407067 Cmo08g00740 Cmo-Chr8:4690171 7.39E-33 transposed
Cmo10g00745 Cmo-Chr10:3433113 Cmo08g00740 Cmo-Chr8:4690171 0 wgd
Cmo11g00708 Cmo-Chr11:3418297 Cmo08g00740 Cmo-Chr8:4690171 0 wgd
Cmo17g00697 Cmo-Chr17:7083257 Cmo08g00740 Cmo-Chr8:4690171 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10261 PF07714 PK_Tyr_Ser-Thr 3.30E-47 CL0016 Cmo TF
74530 PF07714 PK_Tyr_Ser-Thr 3.30E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00740 - - csv:101219484 1407.51