Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00740 | ATGACCTCCATCCACCACCACCACCCTCCTCCCCACCACCACCACCTCTCCAAATCCACCTCCGCCGTCTCCTCCTCCTCCTCCACCGCCACCACCCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTCGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATATTCCAATCCGACGTCCGATCCCTCGATCCGGTCGGCGGATGTTACCGCATCATTCGCGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAGCTCGAGATCGTGCTTCATCAATTGGCGATCTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCGATTCTGGACGCGGATCATCCTATGAGTGGAGGATACGCCGGAATCGAGCACCAATTTGTGGAGGAAGGATTTGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGAGGTTTGGGGGATTCAGGCTTCCCAAATCTCGCCCTGTTCTTCCTTCAAATCCTCTGTTCATGATTTTGATCATGTCGATATTCATTATCATCATCAACAATTTGTTAGGTTTCATCCGGATCATCATCAGTTTCTTCATAAGAGTGAGGTAGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGATTCAGAGCCAATGCAAAATGACCAAGATGGAGAGGTTAAAGGTGCACGGTTGAGTGCGGTGAAAAAAGGAAGAGATCTGATGAAAACTGCTGAAATTTCCTCTGCGATTGCGACTCTGATGGGGTTTCGATCGCTGTTTCTGCTTTTTGGGATTTGTTTTGCTGTTCGTTCTTGCTCTGTCTGTGAATCTTCAGTTATCGTCCCGAACAGGCGAAGCCAAGCGCGTTCTTCGCTCACAGGTGACATCAAAATTATCGTCCCGAACGGTCGAAGCGAAGTGCGTTCTTCGCTCACAGCGACTCGATTAGATGATTCGAGTAGAGCTCCTAGCATTGCACTTCCACCTACCGTACCTGCTAAGAAATGGGGGCACGGTCATGAATTTCGCCATTCAAGAAGGAAGTTTAGAAACAATGCTCCACGGCGTGGTTATCGCGCATCGACTCCGGAGAATGGCCAGCAAGGCCGTGCTGCTGTCTCTCCAATTCAATCACCATTACCATCTGCAACGAGAGGAAGGTCGCCGAGACCTGCGCCATCGCCAATGATTCCACCGAACCACTATTATATGCCCATTCCTGCTCCTACAATTTCTCCTATGGGTTCTTACAAGAAGAGGAAGAAGAGCATGCCACCATCACAAGTTATGATGCTACCACCCCCACCTCCTAATGGGGATTGTGTGATATCATGTACCGAGCCACTGACCTATACACCTCCCGGGACGTTGTGTGGTTGCGTGTGGCCAATTCAAGTCAAAATCAGTCTTGATGTTGCAATATACACGTTTTTCCCTCTGGTTTCGGAGCTGGCAGAGGAAATTGCAGACAGTATTGGTCTGAACCATAGCCAAGTTCGAATTATGGGAGCTGATGCTGCTAGTCAGCAGTTAGAAAAAACGACTGTCCTCATCAACTTGGTTCCGAGAGGACCGAAATTCAATGATACCATGGCCTTTTCGATATATCAGAAGTTTTGGCACAGAAAAATATCCATTAACGCTTCGTTATTTGGTCGATATCAAGTCCTGAATGTCAAATATCCAGGTCTTCCGCCATCTCCTCCGTTACCTCCTTCAGGTACTTCATCCATTAACGATGGCTTGAACACGAGCAATACTAATATTGGAAATGCTATAAAACCTTTGGGAGTCGACGTGCCAAGAAGAAGGAAAGAAGGGCTTAGCGGAAACATGATCGCCGTGATTACTATATCGTCGTTCACTGCCTTTGTTATGTGTGTTGGACTTGCTTGGCTTTGCCTGTTGAGATGCAGAGTGTTTGCACATCAGGCAGCACAAGCTCCACAAAACTTGATAGCCTCACCTACAAAACCATCAGGCCCTGCTGGATTAATGATGGCTGGAACTGAACCTGGTTCTTCATCCCTGCCTCTCGATGCCGATCCTATGATGTATATAGGAGCTGCAAAGAACTTCACCTTGAAAGATATGAAGAAAGCTACCGACAACTTCGACGTTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTTTACAGTGGCAGTTTGGATGATGGAAGGGAAGTGGCTGTGAAGGTTCTCAAACGACATAATCAACACGGTATTCGGGAATTCTTGGCCGAAGTCGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAATTGATTGGTATCTGTACAGAAGATCAGATTCGCTGCCTTGTTTATGAATTGGTTCCGAATGGAAGCGTCGAATCGCATTTACATGGCATTGACAAGTTAACTGGCCCTCTTGACTGGGATGCTCGGATGAAGATTGCCCTCGGTGCTGCTCGTGGCCTAGCTTATTTGCACGAAGACTCTAATCCTCGAGTTATTCATCGAGATTTCAAAGCTAGCAACATCTTGTTGGAATATGACTTTACAGCTAAAGTTTCAGATTTTGGATTAGCTAGAACTGCACTAGAGGAAGGAAACAAGCACATCTCAACCCATGTGATGGGAACTTTTGGTTATCTAGCTCCGGAGTATGCAATGACGGGCCACCTTCTTGTAAAGAGCGATGTCTACAGCTATGGTGTTGTCCTTCTCGAGCTACTTACGGGAAGAAAACCAGTTGACTTGTTGCTTCCACCGGGGCAAGAAAATCTTGTTGCTTGGGCTCGACCGCTTCTAACGAGCAAGGAGGGGTTAGATGTAATTACAGACCCAGCTATTAAGTCTGATATCTCTATTGATAGCTTGGCCAGAGTAGCTGCAATTGCTTCTATGTGTGTGCAACCTGAAGTGTCTCACAGACCATTTATGGGCGAGGTTGTTCAAGCTCTAAAGCTTGTTTGCAATGAGTTCGAAGAGACAAATGAGGCAGGTTCACGAAGTTACAGCCGAGACGAACTTCTAAGTTACATGGATAGTAAATTTGGAGGAATTTCAGGGGAAATACTAAACGCTACCGACACCTTGCACCCGTTTCCTTCAGAAAAAGAGACGAATGTAGGACTATCGGCATCGGATTTAATCAGCGCATCTGCAAGATTTGAAGGACAGGAATTAGTTTCCTTGAGATGGCATACATCAAACTCAGAACCCTTGAAAATGGGAAGGAAGAGGCAGTTCTGGCAGAAACTAAGAAGTTTATCACGAGGCAGCATCAGTGAACATGGCTTTTCTTCTAAATTTTGGCCTGGATTTCGTTAG | 3426 | 46.99 | MTSIHHHHPPPHHHHLSKSTSAVSSSSSTATTQACAACKYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADHPMSGGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQASQISPCSSFKSSVHDFDHVDIHYHHQQFVRFHPDHHQFLHKSEVEAGMVEIDNVILKEDSEPMQNDQDGEVKGARLSAVKKGRDLMKTAEISSAIATLMGFRSLFLLFGICFAVRSCSVCESSVIVPNRRSQARSSLTGDIKIIVPNGRSEVRSSLTATRLDDSSRAPSIALPPTVPAKKWGHGHEFRHSRRKFRNNAPRRGYRASTPENGQQGRAAVSPIQSPLPSATRGRSPRPAPSPMIPPNHYYMPIPAPTISPMGSYKKRKKSMPPSQVMMLPPPPPNGDCVISCTEPLTYTPPGTLCGCVWPIQVKISLDVAIYTFFPLVSELAEEIADSIGLNHSQVRIMGADAASQQLEKTTVLINLVPRGPKFNDTMAFSIYQKFWHRKISINASLFGRYQVLNVKYPGLPPSPPLPPSGTSSINDGLNTSNTNIGNAIKPLGVDVPRRRKEGLSGNMIAVITISSFTAFVMCVGLAWLCLLRCRVFAHQAAQAPQNLIASPTKPSGPAGLMMAGTEPGSSSLPLDADPMMYIGAAKNFTLKDMKKATDNFDVARILGEGGFGIVYSGSLDDGREVAVKVLKRHNQHGIREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPNGSVESHLHGIDKLTGPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEYDFTAKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLLLPPGQENLVAWARPLLTSKEGLDVITDPAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFEETNEAGSRSYSRDELLSYMDSKFGGISGEILNATDTLHPFPSEKETNVGLSASDLISASARFEGQELVSLRWHTSNSEPLKMGRKRQFWQKLRSLSRGSISEHGFSSKFWPGFR | 1141 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4690171 | 4699428 | - | CmoCh08G007400.1 | Cmo08g00740 | 387473 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00740 | 1141 | MobiDBLite | consensus disorder prediction | 380 | 395 | - | - | |
Cmo08g00740 | 1141 | ProSitePatterns | Protein kinases ATP-binding region signature. | 752 | 774 | IPR017441 | GO:0005524 | |
Cmo08g00740 | 1141 | Gene3D | Phosphorylase Kinase; domain 1 | 717 | 821 | - | - | |
Cmo08g00740 | 1141 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 868 | 880 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo08g00740 | 1141 | MobiDBLite | consensus disorder prediction | 351 | 442 | - | - | |
Cmo08g00740 | 1141 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cmo08g00740 | 1141 | MobiDBLite | consensus disorder prediction | 402 | 425 | - | - | |
Cmo08g00740 | 1141 | ProSiteProfiles | LOB domain profile. | 33 | 134 | IPR004883 | - | |
Cmo08g00740 | 1141 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cmo08g00740 | 1141 | CDD | STKc_IRAK | 752 | 1020 | - | - | |
Cmo08g00740 | 1141 | ProSiteProfiles | Protein kinase domain profile. | 746 | 1027 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo08g00740 | 1141 | Pfam | Lateral organ boundaries (LOB) domain | 34 | 129 | IPR004883 | - | |
Cmo08g00740 | 1141 | PANTHER | OS01G0750732 PROTEIN | 352 | 1140 | - | - | |
Cmo08g00740 | 1141 | Pfam | Protein tyrosine and serine/threonine kinase | 749 | 1019 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo08g00740 | 1141 | SUPERFAMILY | Protein kinase-like (PK-like) | 726 | 1019 | IPR011009 | - | |
Cmo08g00740 | 1141 | MobiDBLite | consensus disorder prediction | 427 | 442 | - | - | |
Cmo08g00740 | 1141 | PANTHER | OS01G0750732 PROTEIN | 352 | 1140 | - | - | |
Cmo08g00740 | 1141 | Gene3D | Transferase(Phosphotransferase) domain 1 | 822 | 1042 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00740 | Cmo-Chr8:4690171 | Cmo19g00148 | Cmo-Chr19:815151 | 0 | dispersed | |
Cmo05g00101 | Cmo-Chr5:407067 | Cmo08g00740 | Cmo-Chr8:4690171 | 7.39E-33 | transposed | |
Cmo10g00745 | Cmo-Chr10:3433113 | Cmo08g00740 | Cmo-Chr8:4690171 | 0 | wgd | |
Cmo11g00708 | Cmo-Chr11:3418297 | Cmo08g00740 | Cmo-Chr8:4690171 | 0 | wgd | |
Cmo17g00697 | Cmo-Chr17:7083257 | Cmo08g00740 | Cmo-Chr8:4690171 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10261 | PF07714 | PK_Tyr_Ser-Thr | 3.30E-47 | CL0016 | Cmo | TF | |
74530 | PF07714 | PK_Tyr_Ser-Thr | 3.30E-47 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00740 | - | - | csv:101219484 | 1407.51 |