Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00742 ATGATGAAAGGTAGTTTTTTGTCTCAACAACAACAACTACTCATGGATCAAACTTTGTCCAATTTGACTTCTCCTTCTTCTCCCAATAACCCGACCCAATTTTTCTCTCCTCCTCCCCCGAAGCGGAAGCGGAATCTCGCAGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCAAAAACGCTCATAGCAACGAATCGATTCGTGTGCGAGATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAGCTACATAGAAGAGGGCATAATCTTCCATGGAAGCTGAAGCAGAGATCAAACAAGGAGGTGATAAAGAAGAAGGTGTATGTTTGTCCTGAGCCAAGCTGTGTCCACCATGATCCATCAAGAGCTCTTGGTGACCTCACAGGAATAAAGAAGCATTTTTGCAGAAAACATGGTGAAAAGAAGTGGAAATGTGACAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAAGGAATATAAATGTGATTGTGGAACGCTTTTCTCGAGGAGAGATAGTTTTATTACACATAGAGCTTTCTGTGATGCATTAGCGGATGAAAGTGCAAGATCAGCTATGGCATTAAGCCCTCTAATCTCAAATTATAATAATTCACAAGAATTATTATTTAAACGAGGCTTCGGTGGCGGTGATAGTAGCAACAACGACGACAACAATTTGAAAACGGAAATCCCGTCGTGGCTGCAGTCGGACGAAATCTTCGTCGGGAGTACCCAACAAACCCTAAACCCTAACCCTAGTGGTTTAGTTTCTCCTTGTGTTTCGTCTCCTCATATATCTGCAACTGCGCTGCTTCAGAAGGCAGCACAAATGGGTGCGACCATGAGCAGTGGCTCGATGGGAAGGACCCACGAGGTGGTTCACGTGTCTACAGGTAATTATGGGGAGATGGGTATAAGGTCACGTGAAGGAGGAATGGGCGTCAGTTGTAGTAGTAGTAGTTGTTGTACTGATTATGGGAATAAAGCTGCGGCGGTTTCTGCGGCGGTTCTTGCCACTGCAACGCCTTCTGGGCCGACCACTTTTCTTCATGACATGATAAATTCCCTTGCTTCTGCTTCTCATCCTTTCCATCAAGATTCCTCCGCCTTTAACGCCGCCGCATTCGCCGCCATGCACCACCACACCGCCGCCGGAAGAAGCGACGGTTTAACCAGAGATTTCTTGGGTCTCCGCCCACTTTCCCATGGAGATATTCTAAGCATTACCGGTTTTGGAAACTGTATTGTTCCCAATTCTGCCACTCTTCAGAGCCAAACCCAGAAGCCATGGCAGGGTTAG 1344 45.83 MMKGSFLSQQQQLLMDQTLSNLTSPSSPNNPTQFFSPPPPKRKRNLAGNPDPDAEVIALSPKTLIATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALADESARSAMALSPLISNYNNSQELLFKRGFGGGDSSNNDDNNLKTEIPSWLQSDEIFVGSTQQTLNPNPSGLVSPCVSSPHISATALLQKAAQMGATMSSGSMGRTHEVVHVSTGNYGEMGIRSREGGMGVSCSSSSCCTDYGNKAAAVSAAVLATATPSGPTTFLHDMINSLASASHPFHQDSSAFNAAAFAAMHHHTAAGRSDGLTRDFLGLRPLSHGDILSITGFGNCIVPNSATLQSQTQKPWQG 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4706485 4708883 - CmoCh08G007420.1 Cmo08g00742 387475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00742 447 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Cmo08g00742 447 Pfam Zinc finger, C2H2 type 70 92 IPR013087 -
Cmo08g00742 447 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Cmo08g00742 447 Gene3D Classic Zinc Finger 125 204 - -
Cmo08g00742 447 MobiDBLite consensus disorder prediction 20 53 - -
Cmo08g00742 447 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 428 - -
Cmo08g00742 447 Gene3D Classic Zinc Finger 49 118 - -
Cmo08g00742 447 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 29 428 - -
Cmo08g00742 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Cmo08g00742 447 SMART c2h2final6 112 142 IPR013087 -
Cmo08g00742 447 SMART c2h2final6 147 167 IPR013087 -
Cmo08g00742 447 SMART c2h2final6 70 92 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01780 Cmo-Chr1:13151983 Cmo08g00742 Cmo-Chr8:4706485 1.29E-110 dispersed
Cmo07g00978 Cmo-Chr7:4810001 Cmo08g00742 Cmo-Chr8:4706485 3.50E-113 dispersed
Cmo08g00742 Cmo-Chr8:4706485 Cmo14g00196 Cmo-Chr14:889620 2.89E-112 dispersed
Cmo18g00662 Cmo-Chr18:8407004 Cmo08g00742 Cmo-Chr8:4706485 6.81E-108 dispersed
Cmo01g00064 Cmo-Chr1:257387 Cmo08g00742 Cmo-Chr8:4706485 2.99E-129 wgd
Cmo14g01296 Cmo-Chr14:10837630 Cmo08g00742 Cmo-Chr8:4706485 1.15E-137 wgd
Cmo17g00694 Cmo-Chr17:7056431 Cmo08g00742 Cmo-Chr8:4706485 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10262 PF00096 zf-C2H2 0.0044 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00742 K25870 - csv:101220200 595.89