Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00748 ATGAAAATCGAGTCGATGAGACGGGGAAGGATAAGGGAGAGGATCCGGCGGAGCCATCTCTATACATTCGGTTGCATCCGGTCACAGAGTGCATATGAGGCCGATGATTCGAATCCATTAACAGGACCTGGTTTTTCACGAATTGTCTGTTGTAACCAACCTCATCTCCATGAGAGGCAGCCATTGAAATACTGCTTCAATTACATATCCACAACCAAGTATAATGTTCTTACTTTCTTGCCTAAGGCTCTCTTTGAGCAATTCAGGAGAGTTGCCAATTTGTACTTTCTTTTGGCTGCATTGTTGTCCCTCACACCAGTTGCCCCATTTTCTGCCATGAGCATGATTGCTCCTCTGGTATTTGTTGTTGGTCTCAGTATGGCTAAAGAAGCTCTCGAGGACTGGAGTCGATTCGTGCAGGATATGAAGGTTAATCTCAGGAAAGTGATTGTTCATAAAGGGGATGGTGTTTTTGGTCATAGACCTTGGCACAAGATTCGTGTAGGAGACATAGTGAAAGTAGAGAAGGATCAGTTCTTTCCCGCTGATCTACTTCTTTTGTCGTCGTGCTATGAGGACGGTATATGTTACGTGGAAACGATGAATTTGGATGGCGAGACTAATCTCAAAGTAAAGAGATCTTTGGAAGTAACCTTACCATTGGATGATGATGCTACCTTCAAAGACTTTACTGGAAAGATTTACTGTGAAGATCCAAACCCAAATCTTTACACATTTGTTGGTAACTTGGAGTATGATCGGCAGATTTATCCTCTTGATCCTAGCCAGATTCTCCTCAGAGATTCTAAATTGAGGAACACAGCTTATGCCTACGGGGTAGTGATATTTACTGGACATGATAGTAAAGTCATGCAGAATGCTACAAAATCTCCTTCCAAAAGAAGTAGAATAGAGAGAAAAATGGACAAGATTATTTACATCCTTTTTACCTTACTTGTATTGATATCATCAATGAGCTCAATAGGTTTTGCTGTGAAGACAAAGTACCAAATGACTGACTGGTGGTATTTACAAACTACTGGTGATGATCCACTGTATAACCCTCGTCAGCCAACCTTATCAGGGCTCATACATTTGATCACTGCTCTTATACTCTATGGATATTTGATACCGATCTCGCTCTATGTTTCCATCGAGGTTGTTAAGGTTCTACAAGCTTCCTTCATTAACCAAGATATTAACATGTATTGTGAAGAGACTAGTAATCCCGCTCGAGCTCGGACTTCAAATTTGAACGAGGAGTTGGGTCAGGTAGACACGATCCTATCCGACAAAACTGGCACTTTGACTTGTAATCAGATGGACTTTCTGAAATGTTCCATTGCTGGGACTGCGTATGGTGTTAAATCTAGTGAGGTTGAACTTGCAGCTGCAAGGCAGATGGCATATGACCTTGACGAGCAGGATGCAGATTATTCTGATGTTGTTGTGCAAAAAAATAGCCGACAGTCTTCCATGGCATGGGACCGAAAAGAATCGGAGATTGAATTGGAGACTGTTCTTACTTCAAGTGTTGTCAAAGAGCAGAAGTCTGCCATAAAGTATTTTGGTTTTGAGGACAGCCGTTTAACAAATGGAAACTGGTTGAATGAGCCTAATCATGATGTTCTTCTATTGTTCTTCAGAATTTTAGCAATTTGTCACACTGCAATTCCTGAGCTGAATGAGGAAACTGGTGCTTTTACTTATGAAGCAGAGTCCCCTGATGAAGGTGCTTTTCTTGTTGCAGCAAGAGAATTTGGTTTTGAGTTTTGTAAGAGAACACAATCAACCTTGGTTGTGCGTGAAAGATATCCTTCTCCTAACCAAGTAGTTGAAAGGGAATACAAAGTTTTAAATCTTTTGGATTTCACTAGCAAGAGAAAGAGAATGTCTGTAATTGTTAGGGATGAGTATGGCCATATTATTCTTCTCTGCAAAGGTGCTGATAGCATCATCTTCGATCGACTATCGAAGAACGGAAGAATGTATGAGGAAGCAACCACAAGGCATTTGAATGAATATGGAGAAGCTGGGTTGCGTACTCTGGCACTTGCTTATAGAAAGCTTGAGGAGTCCGAGTATACTGCTTGGAACAACGAGTTTCAGAAGGCTAAAACGTCCATTGGAGGAGATAGAGATGCAATGCTCGAGCGAGTGTCCGACCTCATGGAACGAGAATTAACCCTTGTTGGTGCTACCGCTGTGGAGGACAAGTTACAGAATGGGGTGCCCCAATGCATTGATAAACTTGCACAAGCTGGCCTTAAGATCTGGGTTTTGACTGGAGATAAAATGGAAACTGCCATCAACATTGGATATGCATGCAGTTTACTTCGACAGGGAATGAAGCGGATTTGCATATCAACAAGCTCAGATTCTTTAGCTCAGGAAGGAAAAGAGGCCATGAAAGAATATATTTTGAATCAAATCACCAACGCCTCGCAAATGATCAATCTGGAGAAGGATCCACACGCTGCATTCGCTTTAATCATTGATGGGAAGACTCTAACATATGCTCTCGAAGATGATATGAAGTTTCAATTCCTTGGACTCGCTGTTGATTGTGCATCGGTCATTTGCTGTCGTGTCTCCCCCAAGCAAAAAGCCCTGGTAACAAGGTTAGTGAAAGAAGGTACTGGGAAAACCACTTTGGCAATTGGTGATGGCGCAAACGATGTGGGAATGATTCAAGAGGCCGATATTGGTGTCGGTATCAGCGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGATTTCTCTATTGCCCAATTTCGGTTTCTTGAAAGGCTTCTGGTAGTCCATGGTCATTGGTGCTACAAGAGGATAGCGCAAATGATATGCTATTTCTTCTACAAGAATATCGCATTCGGATTAACGCTGTTCTACTTCGAAGCATACGCGGGATTTTCTGGGCAATCAATATATGATGATTTCTACATGCTATCATTTAATGTCATACTCACCTCATTGCCTGTAATTTCCCTTGGAGTTTTTGAACAAGATGTCTCTTCTGAGGTGTGCCTACAGTTCCCTGCACTCTATCAGCAAGGCCCCCAAAACTTGTTCTTCGACTGGCCTCGGATTTTCGGATGGATGGGGAATGCTGTCTACTCCTCTATAGTTACTTTCTTCCTCAATCTCATCATCTTCTACGACCAGGCATTCCGCTCAGGCGGCCAAACTGCCGACATGACTGCTGTCGGAACCACCATGTTTACTTGCATCATATGGGCAGTAAATTGCCAGATCGCTCTAACAATGAGCCACTTCACCTGGATCCAACACCTTCTCGTCTGGGGTAGTATCGCCATGTGGTATTTGTTCATCTTACTCTATGGAATGGTAATATCCTCTGGAAATGCATATAAAATATTCGTTGAAGCCTTAGGACCTGCCCCTGTTTACTGGGTAGCCACCATCTTAGTAACAATTACCTGCAATCTCCCATATCTTGCCCATATATCCTTCCAAAGAAGCTTCCATCCAATGGATCATCACATAATCCAAGAAATCAAATACTACCGAAAGGATGTGGAAGACACACACATGTGGACCAGGGAAAGATCAAAAGCAAGGCAAAAAACCAAGATAGGATTCACAGCCAGAGTAGAAGCTAAGATCAGGCAGCTAAAAGGAAAGCTCCAAAAGAAGCACTCTTCCCTTGGAGCTCCTCCAACTGGTACTATTTCATGA 3696 42.61 MKIESMRRGRIRERIRRSHLYTFGCIRSQSAYEADDSNPLTGPGFSRIVCCNQPHLHERQPLKYCFNYISTTKYNVLTFLPKALFEQFRRVANLYFLLAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWSRFVQDMKVNLRKVIVHKGDGVFGHRPWHKIRVGDIVKVEKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLPLDDDATFKDFTGKIYCEDPNPNLYTFVGNLEYDRQIYPLDPSQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSRIERKMDKIIYILFTLLVLISSMSSIGFAVKTKYQMTDWWYLQTTGDDPLYNPRQPTLSGLIHLITALILYGYLIPISLYVSIEVVKVLQASFINQDINMYCEETSNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVKSSEVELAAARQMAYDLDEQDADYSDVVVQKNSRQSSMAWDRKESEIELETVLTSSVVKEQKSAIKYFGFEDSRLTNGNWLNEPNHDVLLLFFRILAICHTAIPELNEETGAFTYEAESPDEGAFLVAAREFGFEFCKRTQSTLVVRERYPSPNQVVEREYKVLNLLDFTSKRKRMSVIVRDEYGHIILLCKGADSIIFDRLSKNGRMYEEATTRHLNEYGEAGLRTLALAYRKLEESEYTAWNNEFQKAKTSIGGDRDAMLERVSDLMERELTLVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISTSSDSLAQEGKEAMKEYILNQITNASQMINLEKDPHAAFALIIDGKTLTYALEDDMKFQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPQNLFFDWPRIFGWMGNAVYSSIVTFFLNLIIFYDQAFRSGGQTADMTAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLLVWGSIAMWYLFILLYGMVISSGNAYKIFVEALGPAPVYWVATILVTITCNLPYLAHISFQRSFHPMDHHIIQEIKYYRKDVEDTHMWTRERSKARQKTKIGFTARVEAKIRQLKGKLQKKHSSLGAPPTGTIS 1231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4733146 4738116 + CmoCh08G007480.1 Cmo08g00748 387481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00748 1231 Gene3D - 426 440 IPR023214 -
Cmo08g00748 1231 Pfam Cation transport ATPase (P-type) 554 658 - -
Cmo08g00748 1231 PRINTS P-type cation-transporting ATPase superfamily signature 429 443 - -
Cmo08g00748 1231 PRINTS P-type cation-transporting ATPase superfamily signature 887 906 - -
Cmo08g00748 1231 SUPERFAMILY HAD-like 417 931 IPR036412 -
Cmo08g00748 1231 Gene3D - 441 489 IPR023299 GO:0000166
Cmo08g00748 1231 Gene3D - 598 731 IPR023299 GO:0000166
Cmo08g00748 1231 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 859 968 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo08g00748 1231 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 363 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo08g00748 1231 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 64 1171 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cmo08g00748 1231 SFLD p-type atpase 413 938 IPR044492 -
Cmo08g00748 1231 ProSitePatterns E1-E2 ATPases phosphorylation site. 431 437 IPR018303 -
Cmo08g00748 1231 MobiDBLite consensus disorder prediction 1212 1231 - -
Cmo08g00748 1231 Pfam Phospholipid-translocating P-type ATPase C-terminal 915 1163 IPR032630 -
Cmo08g00748 1231 Gene3D - 732 927 IPR023214 -
Cmo08g00748 1231 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 1223 - -
Cmo08g00748 1231 CDD P-type_ATPase_APLT_Dnf-like 67 1046 - -
Cmo08g00748 1231 SFLD Haloacid Dehalogenase 413 938 - -
Cmo08g00748 1231 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 6 1223 - -
Cmo08g00748 1231 SUPERFAMILY Calcium ATPase, transduction domain A 152 294 IPR008250 -
Cmo08g00748 1231 Gene3D - 125 297 - -
Cmo08g00748 1231 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 530 693 IPR023299 GO:0000166
Cmo08g00748 1231 Pfam Phospholipid-translocating ATPase N-terminal 51 116 IPR032631 -
Cmo08g00748 1231 SUPERFAMILY Calcium ATPase, transmembrane domain M 61 1159 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00748 Cmo-Chr8:4733146 Cmo18g00028 Cmo-Chr18:119077 0 dispersed
Cmo17g00688 Cmo-Chr17:7022461 Cmo08g00748 Cmo-Chr8:4733146 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00748 K01530 - csv:101221220 2291.92