Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00750 ATGGCGGACCGTTCTTCCGATCGCGAAATTGATTCAGGCTTTGATCAGGGCTCACCCCAACCACGTCTTTACAACCCTTACAAGGATCTCCAGGTTCCTTACCGAAACTTCCAGCTTCCAACCTCACCGGAGTTTCTCTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACCGGTTGCGGTTACCTCGCTGGTGCAGTCGGCGGGGCGTCTACGGGCTTCGTCTCCGGCGTCAAATCTTTCGAATCAGGTGATACTATGAAACTTCGGATCAATCGGATCCTGAACTCTTCTGGTCATTCAGGGCGTCTCTGGGGGAATCGGCTCGGTGTGATTGGGTTACTATATGCTGGTTTGGAGAGCGGGATTGAGGCTGTGAGGGATACGGACGACGTATGGAACTGTGTCGCAGCGGGACTTGGCACCGGTGCGCTTTATCGTGCGGCAAGAGGAGTGAGATCAGCGGCGGTGGCCGGTGCTATTGGCGGCGTTGTGGTTGGAGTGGCGGTGACGGGTAAGCAGATGTTGAAGCGGTCTGCTTCTCTTTCCACTTCAATTTTCACCTTCGTTTCTTCTTTTGTTTCAGGGGACGAACATGCCATGGCAGGTTTGGCTCCAGAAGGATCCCAATTTGATTCTCGCCAATATGATTCTAAAATGAATGAGATTCTTTCAGCAGAAGGCCAGGAATTTTTTACCTCTTATGATGAAGTTTATGAAAGTTTTGATTCAATGGGGCTGCAAGAAAACCTCCTTAGAGGCATTTATGCTTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGTATTGTTCCATTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGTACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTGCAGCAACTTGATTATGATCTAGTCCAGTGCCAGGCTTTAGTTTTGGCACCAACTAGGGAGCTCGCTCAACAAATAGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTTCATGCTTGTGTGGGAGGGACAAGTGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCACGTTGTAGTTGGAACACCTGGTCGTGTGTTTGATATGTTAAGGAGGCAGTCTCTTCGCCCGGATTCTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGCTTTTGACATCTCTTTTCCAAGTGAATTGGGTCAATACTAATGGGAGTATTAAACCATTCGAATGTACTCCTTTTAAATCATATAATGTACATTACCCATCAGATCCTTGGCCGTTGTTTGCAGTGATTTATGACATTTTCCAGCTTTTGCCATCAAAAATTCAAGTTGGGGTCTTCTCCGCCACAATGCCACCTGAAGCTTTGGAGATCACTAGGAAGTTCATGAATAAGCCAGTCCGAATCTTAGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTCGATAAGGAAGATTGGAAGCTCGAAACTCTTTGTGATCTCTACGAGACTCTGGCCATCACTCAAAGTGTTATCTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACTGTATCTGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATCATGCGCGAATTCCGGTCTGGCTCTTCTCGAGTTCTTATTACAACTGATTTGTTGGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTGCCAACCCAACCCGAAAATTATCTTCATCGTATTGGTCGAAGTGGTCGATTTGGAAGAAAAGGTGTCGCCATCAATTTTGTTACAAACGATGATGAGCGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATTGAAGAGCTGCCCGCTAATGTTGCAGATCTCCTATGA 1992 46.03 MADRSSDREIDSGFDQGSPQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTGKQMLKRSASLSTSIFTFVSSFVSGDEHAMAGLAPEGSQFDSRQYDSKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYDLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQLLTSLFQVNWVNTNGSIKPFECTPFKSYNVHYPSDPWPLFAVIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDERMLFDIQKFYNVVIEELPANVADLL 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4741661 4750477 - CmoCh08G007500.1 Cmo08g00750 387483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00750 663 MobiDBLite consensus disorder prediction 1 25 - -
Cmo08g00750 663 CDD DEADc_EIF4A 253 492 - -
Cmo08g00750 663 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 663 IPR001650 -
Cmo08g00750 663 Pfam Tim17/Tim22/Tim23/Pmp24 family 64 173 - -
Cmo08g00750 663 Gene3D - 238 498 IPR027417 -
Cmo08g00750 663 Gene3D - 499 663 IPR027417 -
Cmo08g00750 663 SMART helicmild6 543 624 IPR001650 -
Cmo08g00750 663 Pfam Helicase conserved C-terminal domain 516 624 IPR001650 -
Cmo08g00750 663 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 248 276 IPR014014 GO:0003724
Cmo08g00750 663 Pfam DEAD/DEAH box helicase 273 476 IPR011545 GO:0003676|GO:0005524
Cmo08g00750 663 PANTHER RNA HELICASE 453 663 - -
Cmo08g00750 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 644 IPR027417 -
Cmo08g00750 663 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 279 491 IPR014001 -
Cmo08g00750 663 SMART ultradead3 267 506 IPR014001 -
Cmo08g00750 663 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 231 418 - -
Cmo08g00750 663 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 453 663 - -
Cmo08g00750 663 PANTHER RNA HELICASE 231 418 - -
Cmo08g00750 663 CDD SF2_C_DEAD 503 633 - -
Cmo08g00750 663 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 395 403 IPR000629 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00057 Cmo08g00750 CCT
Cmo08g00750 Cmo14g01286 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00724 Cmo-Chr7:3266220 Cmo08g00750 Cmo-Chr8:4741661 1.12E-12 dispersed
Cmo08g00750 Cmo-Chr8:4741661 Cmo17g00686 Cmo-Chr17:7014859 0 dispersed
Cmo01g00057 Cmo-Chr1:200325 Cmo08g00750 Cmo-Chr8:4741661 0 wgd
Cmo14g01286 Cmo-Chr14:10771250 Cmo08g00750 Cmo-Chr8:4741661 0 wgd
Cmo17g00685 Cmo-Chr17:7012979 Cmo08g00750 Cmo-Chr8:4741661 9.47E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00750 K03257 - csv:101221456 789.645