Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00754 ATGAATTTGGGAGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATCCCTGCCGAAATCGATTGGCAAATGCTTGATAAATCTAAATTCTTCTTTCTCGGTGCAGCGTTGTTTTCAGGCGTTTCGGCGTCTCTTTACCCTATGGTGGTGTTGAAAACTCGTCAACAGGTTGCTTATTCGGAGCTTCCGTGCATCAGAACTGCATTTTCTCTCGTCCGCCATGAAGGTTTTCGTGCTCTGTACAGAGGATTTGGAACTTCTCTGATGGGGACTATCCCTGCTAGGGCTCTGTACATGGGAGCCCTAGAGTGTACAAAGAGCTATGTCGGAACCGCCACTGTTAGAATGGGATTTCCAGAGGCTACTGCCGCTACAATTGCTAATGCAGCCGCTGGATTGAGCGCTGCAATGGCCGCTCAACTCGTATGGACTCCAGTTGATGTAGTGAGTCAAAGACTGATGGTTCAAAGTAGCTCCTCCATTCATTACATCAATGGAATCGATGCGTTTCGAAAGATCCTCAACGCCGACGGTCTCCGAGGACTCTACCGAGGCTTTGGGATATCGATTATGACATACGCGCCATCGAATGCGATGTGGTGGGCTTCTTATTATGTAGCACAGCGGCTGATTTGGGGGGGAATCGGATGCTATCAAGCTAAGAAGGTTGTTGGTGAAGGCAATGACAATGGGGCTAATGTTTACAGGCCAGATTCCAAGACTGTGATGGCAGTACAGGGAGGGAGCGCAGCCATGGCGGGTAGTATCTCGGCTTTGATAACAATGCCTCTTGATACAATCAAGACAAGATTGCAAGTTTTGGATGGGGATGAGAATGGGAGAAGAGGGCCAACAATTGGTCAGACATTGAGAAATTTAGTAAGGGAAGGCGGGTGGGCGGCGTGTTATCGAGGTTTGGCGCCCCGGTGCGCGTCGATGTCGATGTCTGCAACGACAATGATCACCACATATGAACTTCTCAAACGGCTATCAACCAAGAATCAAGAGGGTTTAATAAGCTAA 1023 48.97 MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAYSELPCIRTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALECTKSYVGTATVRMGFPEATAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQSSSSIHYINGIDAFRKILNADGLRGLYRGFGISIMTYAPSNAMWWASYYVAQRLIWGGIGCYQAKKVVGEGNDNGANVYRPDSKTVMAVQGGSAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWAACYRGLAPRCASMSMSATTMITTYELLKRLSTKNQEGLIS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4770418 4771440 + CmoCh08G007540.1 Cmo08g00754 387487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00754 340 Pfam Mitochondrial carrier protein 38 109 IPR018108 -
Cmo08g00754 340 Pfam Mitochondrial carrier protein 249 334 IPR018108 -
Cmo08g00754 340 Pfam Mitochondrial carrier protein 126 211 IPR018108 -
Cmo08g00754 340 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 336 - -
Cmo08g00754 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 210 IPR018108 -
Cmo08g00754 340 Gene3D Mitochondrial carrier domain 30 337 IPR023395 -
Cmo08g00754 340 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Cmo08g00754 340 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Cmo08g00754 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Cmo08g00754 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 241 330 IPR018108 -
Cmo08g00754 340 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 336 - -
Cmo08g00754 340 SUPERFAMILY Mitochondrial carrier 23 327 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01800 Cmo-Chr1:13244977 Cmo08g00754 Cmo-Chr8:4770418 4.42E-11 dispersed
Cmo08g00754 Cmo-Chr8:4770418 Cmo09g00356 Cmo-Chr9:1537744 4.73E-162 dispersed
Cmo17g00679 Cmo-Chr17:6942765 Cmo08g00754 Cmo-Chr8:4770418 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00754 K15121 - csv:101210602 576.244