Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00755 ATGGATGGAGGTGGCGCAGTGCATAATCGTTCAGTCGAAGATGTTTTCAGTGATTTTAGAGGCCGAAGAAGTGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTTTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGTTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTCCCAGAGCCAGCATTGGGTATTAATTTCGCAAGAGATGGTATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGCGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTTAATATGATAAACGATTTGCCAACTGTATTTGAAGTAGTCACTGGTGTTGCAAAGAAACCAGTCAAGGAAAAGTCGTCGAGTGCTAATGGTAGCAGATCCAAGTCCAACTTTAAAACGAGGGAAGCTGAAATCCATGGAATGTATTCAAGGCAACCGCAGGCAAGGGAAGAGGTAGAGGCCTTGTATCAAGAAGACGAAGACGAGCACGGGGACACGTTGTGTGGGGCATGTGGTGAGAATTATGCATCAGATGAATTTTGGATTTGCTGTGATATCTGCGAGAAGTGGTTCCATGGTAAATGCGTGAGAATAACTCCTGCCAAAGCAGAGCACATCAAGCAGTACAAATGCCCATCCTGCAGCCACAAGAGAGGCCGCGTTTAA 756 44.58 MDGGGAVHNRSVEDVFSDFRGRRSGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKADRRRLFNMINDLPTVFEVVTGVAKKPVKEKSSSANGSRSKSNFKTREAEIHGMYSRQPQAREEVEALYQEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSHKRGRV 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4772591 4775284 - CmoCh08G007550.1 Cmo08g00755 387488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00755 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cmo08g00755 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 6 250 - -
Cmo08g00755 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Cmo08g00755 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cmo08g00755 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cmo08g00755 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cmo08g00755 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cmo08g00755 251 PANTHER CPG BINDING PROTEIN 6 250 IPR045104 GO:0006355|GO:0042393
Cmo08g00755 251 SMART PHD_3 197 245 IPR001965 -
Cmo08g00755 251 Pfam PHD-finger 198 246 IPR019787 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00755 Cmo17g00678 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00939 Cmo-Chr4:4752502 Cmo08g00755 Cmo-Chr8:4772591 3.67E-108 dispersed
Cmo04g01181 Cmo-Chr4:6039376 Cmo08g00755 Cmo-Chr8:4772591 1.27E-104 dispersed
Cmo06g00221 Cmo-Chr6:1192609 Cmo08g00755 Cmo-Chr8:4772591 3.43E-89 dispersed
Cmo08g00755 Cmo-Chr8:4772591 Cmo12g01349 Cmo-Chr12:11655177 1.52E-119 dispersed
Cmo17g00678 Cmo-Chr17:6938430 Cmo08g00755 Cmo-Chr8:4772591 1.41E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10263 PF12165 Alfin 7.20E-68 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00755 - - csv:101222322 488.034