Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00800 ATGTGGTGGAGATCGGCTTCTTTCATCCTGGACAAGCAGCAAACTGAAGGCGTTTCAAAGCAACCTGAAACCCTTTCTATTTCACCGCCTGTCGACGAATCTTCTATGGCGGACACTTTCCAGAACCCTAACCCTAAAATCTCTGCCTATTACCAAAGTAGGGCTTCTCACACCGCCGTCGTCACCAGTGATTGGCTCGCACAGGCGCAAGCTGCTGTCGGATTCCCGACCGACGAACAATTGTTATCGGAAGCTGATGTTAGGGACTCTGAATCTGGCAAGCCTTTCTGTGTGATCGATGAGTTTAATAACTGGAGGAAACAGCCGGATTTGGCCGAGGCCGTCGCAGCTATTCGGTCTTTGGCGGCTGTAATACGGTCCAGTCAGGCCACGACAATGATGGAGCTCGAAATTGAGCTGAAAAAGGCCTCGGACTCTCTGAAGTCATGGGATACAACTTCAATATCGTTGACGGCTGGGTGTGATTTGTTCATGCGGTATGTAACTAGAACATCGGCTTTAGAATATGAGGATTTCAAGTCTGCTAAGTCTCGCCTGATTGAACGTGCAGAAAAGTTTGGGGAGATATCTTGTAAGGCACGGAGAATTATTGCAATGCTCAGTCAGGATTTCATTTTTGATGGTTGTACAATTTTGGTCCATGGTTTCTCTAGAGTTGTTATGGAAGTTCTGAGGTTAGCTGCACAGAATAAGAAGCTCTTTAGAGTGTTTTGCACAGAAGGAAGACCAGACAGGACAGGGTTGCGTCTATCCAATGAGCTAGCTAAACTTGATGTTCCTGTAAAGCTCCTAATTGACTCAGCAGTAGCATATACGATGGATGAGGTTGATATGGTTCTAGTTGGGGCTGATGGAGTTGTTGAAAGTGGAGGTATAATCAACATGATGGGCACCTATCAAATAGCATTAGTGGCACATAGCATGAACAAACCGATGTATGTAGCTGCTGAGAGTTATAAGTTTGCCCGACTCTACCCATTAGATCAGAAAGACATGGCCCCTGCCCTGCGTCCCATTGATTTTGGGGTCCCTATCCCATCCAAGGTTGAAGTGGAAAAATCTGCTCGTGATTATACTCCTCCTCAATACCTTACTCTTCTCTTCACAGATTTGGGCGTTCTTTCTCCATCTGTGGTGAGTGACGAGCTCATCCAACTATATTTATAG 1188 46.04 MWWRSASFILDKQQTEGVSKQPETLSISPPVDESSMADTFQNPNPKISAYYQSRASHTAVVTSDWLAQAQAAVGFPTDEQLLSEADVRDSESGKPFCVIDEFNNWRKQPDLAEAVAAIRSLAAVIRSSQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFKSAKSRLIERAEKFGEISCKARRIIAMLSQDFIFDGCTILVHGFSRVVMEVLRLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYTMDEVDMVLVGADGVVESGGIINMMGTYQIALVAHSMNKPMYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEVEKSARDYTPPQYLTLLFTDLGVLSPSVVSDELIQLYL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5068338 5072083 - CmoCh08G008000.1 Cmo08g00800 387533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00800 395 Pfam Initiation factor 2 subunit family 109 383 IPR000649 GO:0044237
Cmo08g00800 395 MobiDBLite consensus disorder prediction 13 37 - -
Cmo08g00800 395 Gene3D - 199 395 IPR042529 -
Cmo08g00800 395 SUPERFAMILY NagB/RpiA/CoA transferase-like 111 394 IPR037171 -
Cmo08g00800 395 Gene3D - 96 196 IPR042528 -
Cmo08g00800 395 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 39 395 - -
Cmo08g00800 395 Coils Coil 133 153 - -
Cmo08g00800 395 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 39 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00800 Cmo-Chr8:5068338 Cmo15g00850 Cmo-Chr15:4301204 1.18E-21 dispersed
Cmo08g00800 Cmo-Chr8:5068338 Cmo04g02312 Cmo-Chr4:17194349 1.04E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00800 K03239 - csv:101211420 734.561