Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00808 ATGGGGGAAAAGTGGGTGATTGATTTGAGGCGCTCATATGATTCCTGTTCTGTGCAGAGAGGGAGGACGATGGGTTTAGGGAGTAGAGAGAAGACAATGAATTGGAGGTGGATGGAGATGGTTTCTCTCATCGTTCTTTGCATTCTGGGGTTGAAGCTTCCCACCATTGAAGCTGCCACAGATCCATCAGATGCCTCTGCTTTAAGAGTTTTGTATACCAGCTTGAACTCGCCCCCTCAGTTAACCCAGTGGAATGCTAATGGCGATGATCCATGTGGACAATCATGGAAAGGGATTACTTGCTCTGGCACACGGGTTACAGAAATAAACTTATCTGGCCTCGCTCTCAGTGGATCGATGGGGTACCAACTCGCAAGTTTGACATCGTTAACCAACCTAGATATGAGCAATAACAATATTGGAGGCAGTATAGTCTACCAACTTCCACCATTCCTGCAGAGACTAAATCTTGCTCAAAACAGCTTCACTGAAGGCATCCCTTATTCCATTTCACAGATGACAACTCTTCGATACCTAAATCTCAGTCATAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCACTATCCACATTGGATCTGTCTTTCAATGCTATGTCAGGCGAACTGCCTCAGAGTTTTAGCTCGCTTTCGAGCATCAGCACTATGAATTTGCAAAACAATCAGTTCACTGGCACAATTAATGTCCTTGCAAATCTTCCTCTTGATAACCTGAACGTTGAAAACAACCGTTTCTCTGGCTGGATCCCTGAGCAACTCAAAAGCATCAATCTTCAGACAAATGGCAACTCCTGGAACTCAGGTCCTGCACCCCCTCCTCCTCCTGGTACACCTCCAGCAACTAGAAGGAACCGAAGTCACGATTCTGGTGGCAATAGTCCATCAAATGGTGGTTCTGGTAAAGGTCAGAAATCAGGAATTAGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTGCTCGTTGTTGGAGCTGTAGTAGCATTCTTCATTGTTAGGAAGAGATCCAAGAGATCATCATCTGCAGACATTGAAAAGCTCGACAATCAACCCTCGCAACCTCGTCAAATGACTCCAGCACAAGAATTTGATGTTATTTGTTGCCTGTTTTCGTATGATCGTGTAAAGTTGGGATTTTATGCATTAAGACAAATAAAGTCCGAAGAAACTTCCTCCACATTTTATCCAACAACATTTGATACTTCTGCTGCAATTAATCTCAAACCCCCTCCTAGTGATCGTCATAAATCACTTGATGAAGACGACTTTGCTAAAAGAGCTGTTGTCAAGAAGGCTAGTGCAGCTCCTATTAATGTAAAGTCATATTCAATAGCAGACCTGCAATTGGCTACTGGCAGCTTCAATTTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTTTATCGGGCTGAGTTTGATGACGGGAAGATTCTTGCCGTGAAAAAAATCAATTCGGCTGTACTACCTGGGGACTTATCTGAAGATTTCACCGACATTGTTTCGAAAGTCTCCGAGTTACACCATCCCAATATAACCGAGCTCGTGGGTTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTATGATTTCTTGCATCATTCAGACGAATACAACCAGCCACTGATATGGAATAGTCGTGTTAAGATTGCTTTGGGAACAGCCCGTGCACTAGAGTATCTTCATGAAGTTTGCTCCCCATCAATTGTTCATAGAAACATCAAGTCTGCTAACATACTGCTGGATGCGGAACTCAGCCCCCACCTCTCTGATTCTGGACTGGAAAGCTTTGTACCAAATGCAGATCAGATACTGTATAGTGATCAACTCATATCTTATAACGTGCAGGCACTGGATCACAATGCAAGTTCAGGATACACTGCCCCCGAGGTCACGATGTCTGGCCTTTATACGCTGAAAAGCGATGTCTACAGCTTTGGAGTAGTCATGTTGGAACTGTTGACTGGGCGCAAACCATTCGACAGTCAACTTGCCATTTGTCTTCCTTCATCTTCTTATCATACTTCCGTTTCGATTTTGTTGTCATTCAGTTCAAGACCAAGGACCGAGCAATCCTTGGTTCGATGGGCTACACCCCAGCTTCATGACATTGATGCGTTGACCAAGATGGTCGATCCAGAACTCCAAGGACTATATCCAGTTAAATCACTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTCCAGACCGAACCAGAGTTCAGACCTCCAATGTCGGAAGTGGTCGAAGCATTGGTTCGACTTGTCCAGCGAGCTAACATGAGTAAGAGAACATATGGAAATGATAATGCAGCAGCGTCTCCCAGAGGAGGGGACATGGGTGGGGATGATACACCATAA 2418 44.46 MGEKWVIDLRRSYDSCSVQRGRTMGLGSREKTMNWRWMEMVSLIVLCILGLKLPTIEAATDPSDASALRVLYTSLNSPPQLTQWNANGDDPCGQSWKGITCSGTRVTEINLSGLALSGSMGYQLASLTSLTNLDMSNNNIGGSIVYQLPPFLQRLNLAQNSFTEGIPYSISQMTTLRYLNLSHNQLQNPLIDMFGQLTSLSTLDLSFNAMSGELPQSFSSLSSISTMNLQNNQFTGTINVLANLPLDNLNVENNRFSGWIPEQLKSINLQTNGNSWNSGPAPPPPPGTPPATRRNRSHDSGGNSPSNGGSGKGQKSGISGGAIAGIIISVLVVGAVVAFFIVRKRSKRSSSADIEKLDNQPSQPRQMTPAQEFDVICCLFSYDRVKLGFYALRQIKSEETSSTFYPTTFDTSAAINLKPPPSDRHKSLDEDDFAKRAVVKKASAAPINVKSYSIADLQLATGSFNFENLLGEGSFGRVYRAEFDDGKILAVKKINSAVLPGDLSEDFTDIVSKVSELHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHHSDEYNQPLIWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFVPNADQILYSDQLISYNVQALDHNASSGYTAPEVTMSGLYTLKSDVYSFGVVMLELLTGRKPFDSQLAICLPSSSYHTSVSILLSFSSRPRTEQSLVRWATPQLHDIDALTKMVDPELQGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNAAASPRGGDMGGDDTP 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5112712 5117529 - CmoCh08G008080.1 Cmo08g00808 387541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00808 805 SUPERFAMILY Protein kinase-like (PK-like) 447 771 IPR011009 -
Cmo08g00808 805 SUPERFAMILY L domain-like 60 266 - -
Cmo08g00808 805 ProSitePatterns Protein kinases ATP-binding region signature. 470 493 IPR017441 GO:0005524
Cmo08g00808 805 Gene3D Transferase(Phosphotransferase) domain 1 543 794 - -
Cmo08g00808 805 PANTHER OS01G0253100 PROTEIN 703 798 IPR045271 GO:0004714|GO:0006468
Cmo08g00808 805 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 703 798 - -
Cmo08g00808 805 MobiDBLite consensus disorder prediction 293 314 - -
Cmo08g00808 805 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 51 682 - -
Cmo08g00808 805 Pfam Leucine rich repeat N-terminal domain 62 102 IPR013210 -
Cmo08g00808 805 Gene3D Phosphorylase Kinase; domain 1 426 541 - -
Cmo08g00808 805 ProSiteProfiles Protein kinase domain profile. 464 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00808 805 Pfam Leucine Rich repeat 173 188 IPR001611 GO:0005515
Cmo08g00808 805 Pfam Leucine Rich repeat 127 145 IPR001611 GO:0005515
Cmo08g00808 805 MobiDBLite consensus disorder prediction 270 315 - -
Cmo08g00808 805 MobiDBLite consensus disorder prediction 785 805 - -
Cmo08g00808 805 PANTHER OS01G0253100 PROTEIN 51 682 IPR045271 GO:0004714|GO:0006468
Cmo08g00808 805 Pfam Protein tyrosine and serine/threonine kinase 465 771 IPR001245 GO:0004672|GO:0006468
Cmo08g00808 805 Gene3D Ribonuclease Inhibitor 61 285 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00024 Cmo08g00808 CCT
Cmo08g00808 Cmo17g00626 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00081 Cmo-Chr6:488448 Cmo08g00808 Cmo-Chr8:5112712 2.42E-124 dispersed
Cmo08g00808 Cmo-Chr8:5112712 Cmo15g01506 Cmo-Chr15:10197461 0 dispersed
Cmo01g00024 Cmo-Chr1:83641 Cmo08g00808 Cmo-Chr8:5112712 0 wgd
Cmo14g01254 Cmo-Chr14:10564460 Cmo08g00808 Cmo-Chr8:5112712 0 wgd
Cmo17g00626 Cmo-Chr17:6571058 Cmo08g00808 Cmo-Chr8:5112712 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74532 PF07714 PK_Tyr_Ser-Thr 1.20E-39 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00808 - - csv:101213107 1079.7