Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00816 ATGACGTCTCGTGGTTCATCGGCTTCGGGCAATGGCCTATTTCCGCTCAACGCTTCCACGTCCGGCCGGCAAGACGATGTTGAGGCTGGGCTCTCCTCCGGCAAAAGCATTAACAAGGAGGAGGAAGAAGAGGTTTCCGATCCTTTTGATGTCGACAATACCAAAAATGTCCCGCTCGAGATACTCAAGCGATGGAGGCAAGCTGCGTTGGTGCTTAATGCTTCTCGGAGATTTCGATATACTTTGGATTTAAAAAAGGAGGAAGAGAAAGAGAAAAGAAGAAGGATGATTAGAGCCCACTCTCAAGTTATAAGGGCAGCACTGCTTTTCAAATTGGCAGGGGAACAACAAACTGGTTTCTCAGTACCACCTCCAACGTCAACTGGTGACTATGGTATTAATTTAGAACATCTTGTCTCACTGACCCGTGAACAAAACTTTTCTTCTCTACAACAATATGGAGGAGTCAAAGGCTTATCAAATTTATTGAAAACAAATACCGATAAAGGAATACTGGGGGATGAAACTGATTTACTAAAAAGAAGAAATACATTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGTTTCTTGAGATTTCTTTGGGAAGCCTGGCAAGATTTAACCCTAATCATCTTGATTATAGCTGCAGTGGCATCATTAGCTTTGGGAATGAAAACAAAGGGTGTAAAGGAAGGATGGTATGACGGAGGAAGCATTTCCTTTGCTGTGTTTCTTGTCATAATGGTCACAGCGGTCAGTGATTATCGACAGTCTCTTCAGTTTCAAAACTTAAATGAGGAAAAACAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTCTCAATATTTGATATCGTTGTTGGAGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCTGATGGAATATTAATCACCGGTCATTCACTTGCCATAGATGAATCTAGCATGACTGGCGAAAGCAAGATTGTTCGCAAGGATCAGAAGGCACCCTTTATGATGTCTGGTTGTAAAGTTGCAGATGGAGTTGGTACCATGATGGTAACTGCTGTTGGAATCAATACTGAATGGGGATTGTTGATGGCCAGTATCTCAGAGGATACTGGGGAAGAAACTCCCTTGCAGGTTCGGTTGAACGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCGGTTGCAGTTTCTGTGCTAGCTATCCTTTTGGGCAGATACTTCACTGGAAATACACATGATGCAAATGGAAACATTGAATTTCAGCGTGGGCATACGAGTCTAGGTGATGCTGTAAATGGAGTAATTAGAATCGTTACTGTTGCTGTTACTATTGTGGTTGTTGCAGTGCCTGAAGGACTTCCTTTGGCTGTCACTCTAACATTAGCATACTCCATGAGGAAAATGATGGCCGATAAAGCATTGGTTCGTAGACTGTCTGCTTGCGAAACTATGGGTTCTGCAACAACAATTTGCAGTGATAAGACTGGAACGTTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGGCAAGAAAATGATGAATCCCCCAGATGAGCCACTGGAGCTGCAGTCATCGGTTCTCAATCTGCTATATGAGGGCATTGCTCAGAACAGCGCAGGCAATGTTTTTGTTGCTATGGATGGGAGAAGTATAGAGGTCACTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCTGTCAAGCTGGGAATGAAGTATGATGTTGTCAAATCAGGGTCTGAAGTTCTCCATGTTGTCCCGTTCAATTCAGAAAAGAAGCGAGGAGGTGTTGCGATAAAGCAGGCTGACTCAGAAGTCTACATACACTGGAAAGGAGCGGCAGAGATGGTCTTATCTTCTTGTACAAAGTTTATGGGAATGAATTGTGAAGTGCACTCAATGGAAGGCAATGAGGATTATTTTAAGGCAGCTATTAATGATATGGCTGCAAGAAGTTTGCGTTGTGTTGCGATTGCATATAGACCATATGAATTAGAGAAGGTTCCAGTAGATGAACAAGGTTTGGATCAATGGGATTTGCCTGCTGATGATCTTATTCTGCTTGCAATTGTTGGTATAAAGGATCCTTGTCGTGCTGGTGTTAAAGAGGCTGTTAAAGTGTGCACGGATGCTGGCGTCAAGGTGCGCATGGTAACTGGAGACAATATACAGACCGCCAAAGCTATAGCAATAGAGTGTGGGATACTAAGCGCAACAGACGATGCTTCTGAGCCGACAGTAATTGAAGGAAAAGAATTCCGTGTATTGTCTGAGAAGGAAAGAGAACAAGTTGCCCCGAAAATAACGGTGATGGGGAGGTCTTCACCCAATGACAAACTCTTGCTTGTTCAAGCATTAAGAAAGGGAGGAGACGTCGTTGCTGTAACAGGCGATGGGACAAATGATGCCCCTGCACTCCACGAGGCAGATATCGGTCTTTCTATGGGCATACAAGGCACTGAAGTTGCGAAAGAAAGTTCTGATATTGTTATCTTGGATGATAACTTTGCTTCAGTCGTAAAGGTTGTCAGATGGGGGCGTTCTGTGTATGCAAACATTCAGAAGTTCATCCAGTTTCAGCTCACTGTAAATGTTGCCGCTCTTGTGATTAATGTTGTTGCAGCTGTGTCTTCCGGTGATGTTCCTTTAAATACTGTGCAGCTTCTCTGGGTTAACCTGATCATGGACACACTCGGTGCTCTAGCATTAGCTACTGAACCACCAACGGACCACTTGATGCATCGGTCACCTGTTGGGCGAAGGGAACCCCTTATAACCAATATCATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTTGCTGTCCTTCTTGTTCTCAACTTCTATGCCACTGATATTCTTCAATTGAATACTGATAGCAAGAAGCACGCCTTTAATGTGAAGAATACAGTGATTTTCAATGCCTTTGTCCTCTGCCAAATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAACGTATTCAGTGGCGTGACGAAAAATTACCTCTTTATGGGAATAGTTGGAACGACGTTCTTGCTTCAGATTATCATCGTCGAATTTCTAGGAAAATTTACTTCCACAGTAAAACTTGATGGGAAGCAATGGCTTATCTGCATTGCTATCGGCCTTGTGAGCTGGCCTCTGGCTGTCGTTGGCAAACTGATTCCAGTTCCTGAGACTCCATTGGGTAAATACTTCACAAAGCTAGTTCAACGGTACAGGAGGTCACATGGTGCTTAA 3270 43.15 MTSRGSSASGNGLFPLNASTSGRQDDVEAGLSSGKSINKEEEEEVSDPFDVDNTKNVPLEILKRWRQAALVLNASRRFRYTLDLKKEEEKEKRRRMIRAHSQVIRAALLFKLAGEQQTGFSVPPPTSTGDYGINLEHLVSLTREQNFSSLQQYGGVKGLSNLLKTNTDKGILGDETDLLKRRNTFGSNTYPRKKGRSFLRFLWEAWQDLTLIILIIAAVASLALGMKTKGVKEGWYDGGSISFAVFLVIMVTAVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDIVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKAPFMMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVSVLAILLGRYFTGNTHDANGNIEFQRGHTSLGDAVNGVIRIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGKKMMNPPDEPLELQSSVLNLLYEGIAQNSAGNVFVAMDGRSIEVTGSPTEKAILSWAVKLGMKYDVVKSGSEVLHVVPFNSEKKRGGVAIKQADSEVYIHWKGAAEMVLSSCTKFMGMNCEVHSMEGNEDYFKAAINDMAARSLRCVAIAYRPYELEKVPVDEQGLDQWDLPADDLILLAIVGIKDPCRAGVKEAVKVCTDAGVKVRMVTGDNIQTAKAIAIECGILSATDDASEPTVIEGKEFRVLSEKEREQVAPKITVMGRSSPNDKLLLVQALRKGGDVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYATDILQLNTDSKKHAFNVKNTVIFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGTTFLLQIIIVEFLGKFTSTVKLDGKQWLICIAIGLVSWPLAVVGKLIPVPETPLGKYFTKLVQRYRRSHGA 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5159023 5174066 - CmoCh08G008160.1 Cmo08g00816 387549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00816 1089 SFLD Haloacid Dehalogenase 478 855 - -
Cmo08g00816 1089 Pfam haloacid dehalogenase-like hydrolase 493 817 - -
Cmo08g00816 1089 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 503 700 IPR023299 GO:0000166
Cmo08g00816 1089 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 1067 IPR023298 -
Cmo08g00816 1089 PANTHER CATION TRANSPORTING ATPASE 35 1081 - -
Cmo08g00816 1089 Gene3D - 177 372 - -
Cmo08g00816 1089 Gene3D - 506 703 IPR023299 GO:0000166
Cmo08g00816 1089 Gene3D - 493 848 IPR023214 -
Cmo08g00816 1089 MobiDBLite consensus disorder prediction 1 51 - -
Cmo08g00816 1089 Pfam Cation transporting ATPase, C-terminus 888 1065 IPR006068 -
Cmo08g00816 1089 PANTHER CALCIUM-TRANSPORTING ATPASE 35 1081 - -
Cmo08g00816 1089 MobiDBLite consensus disorder prediction 1 27 - -
Cmo08g00816 1089 Pfam Ca2+-ATPase N terminal autoinhibitory domain 47 89 IPR024750 GO:0005516
Cmo08g00816 1089 CDD P-type_ATPase_Ca_PMCA-like 178 936 - -
Cmo08g00816 1089 PRINTS Sodium/potassium-transporting ATPase signature 239 259 - -
Cmo08g00816 1089 PRINTS Sodium/potassium-transporting ATPase signature 489 510 - -
Cmo08g00816 1089 PRINTS Sodium/potassium-transporting ATPase signature 615 633 - -
Cmo08g00816 1089 PRINTS Sodium/potassium-transporting ATPase signature 875 896 - -
Cmo08g00816 1089 SUPERFAMILY Calcium ATPase, transduction domain A 273 369 IPR008250 -
Cmo08g00816 1089 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 770 883 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo08g00816 1089 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 436 520 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo08g00816 1089 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Cmo08g00816 1089 Gene3D - 204 1057 - -
Cmo08g00816 1089 Pfam E1-E2 ATPase 272 474 - -
Cmo08g00816 1089 SUPERFAMILY HAD-like 494 908 IPR036412 -
Cmo08g00816 1089 SMART Cation_ATPase_N_a_2 152 226 IPR004014 -
Cmo08g00816 1089 PRINTS P-type cation-transporting ATPase superfamily signature 320 334 - -
Cmo08g00816 1089 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Cmo08g00816 1089 PRINTS P-type cation-transporting ATPase superfamily signature 696 707 - -
Cmo08g00816 1089 PRINTS P-type cation-transporting ATPase superfamily signature 718 728 - -
Cmo08g00816 1089 PRINTS P-type cation-transporting ATPase superfamily signature 803 822 - -
Cmo08g00816 1089 PRINTS P-type cation-transporting ATPase superfamily signature 827 839 - -
Cmo08g00816 1089 Gene3D - 59 112 - -
Cmo08g00816 1089 Pfam Cation transporter/ATPase, N-terminus 154 221 IPR004014 -
Cmo08g00816 1089 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 140 1067 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cmo08g00816 1089 SFLD p-type atpase 478 855 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00762 Cmo-Chr5:4277755 Cmo08g00816 Cmo-Chr8:5159023 0 dispersed
Cmo08g00816 Cmo-Chr8:5159023 Cmo12g01137 Cmo-Chr12:10355245 0 dispersed
Cmo08g00816 Cmo-Chr8:5159023 Cmo12g00924 Cmo-Chr12:8557941 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00816 K01537 - csv:101214801 1845.48