Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00816 | ATGACGTCTCGTGGTTCATCGGCTTCGGGCAATGGCCTATTTCCGCTCAACGCTTCCACGTCCGGCCGGCAAGACGATGTTGAGGCTGGGCTCTCCTCCGGCAAAAGCATTAACAAGGAGGAGGAAGAAGAGGTTTCCGATCCTTTTGATGTCGACAATACCAAAAATGTCCCGCTCGAGATACTCAAGCGATGGAGGCAAGCTGCGTTGGTGCTTAATGCTTCTCGGAGATTTCGATATACTTTGGATTTAAAAAAGGAGGAAGAGAAAGAGAAAAGAAGAAGGATGATTAGAGCCCACTCTCAAGTTATAAGGGCAGCACTGCTTTTCAAATTGGCAGGGGAACAACAAACTGGTTTCTCAGTACCACCTCCAACGTCAACTGGTGACTATGGTATTAATTTAGAACATCTTGTCTCACTGACCCGTGAACAAAACTTTTCTTCTCTACAACAATATGGAGGAGTCAAAGGCTTATCAAATTTATTGAAAACAAATACCGATAAAGGAATACTGGGGGATGAAACTGATTTACTAAAAAGAAGAAATACATTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGTTTCTTGAGATTTCTTTGGGAAGCCTGGCAAGATTTAACCCTAATCATCTTGATTATAGCTGCAGTGGCATCATTAGCTTTGGGAATGAAAACAAAGGGTGTAAAGGAAGGATGGTATGACGGAGGAAGCATTTCCTTTGCTGTGTTTCTTGTCATAATGGTCACAGCGGTCAGTGATTATCGACAGTCTCTTCAGTTTCAAAACTTAAATGAGGAAAAACAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTCTCAATATTTGATATCGTTGTTGGAGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCTGATGGAATATTAATCACCGGTCATTCACTTGCCATAGATGAATCTAGCATGACTGGCGAAAGCAAGATTGTTCGCAAGGATCAGAAGGCACCCTTTATGATGTCTGGTTGTAAAGTTGCAGATGGAGTTGGTACCATGATGGTAACTGCTGTTGGAATCAATACTGAATGGGGATTGTTGATGGCCAGTATCTCAGAGGATACTGGGGAAGAAACTCCCTTGCAGGTTCGGTTGAACGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCGGTTGCAGTTTCTGTGCTAGCTATCCTTTTGGGCAGATACTTCACTGGAAATACACATGATGCAAATGGAAACATTGAATTTCAGCGTGGGCATACGAGTCTAGGTGATGCTGTAAATGGAGTAATTAGAATCGTTACTGTTGCTGTTACTATTGTGGTTGTTGCAGTGCCTGAAGGACTTCCTTTGGCTGTCACTCTAACATTAGCATACTCCATGAGGAAAATGATGGCCGATAAAGCATTGGTTCGTAGACTGTCTGCTTGCGAAACTATGGGTTCTGCAACAACAATTTGCAGTGATAAGACTGGAACGTTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGGCAAGAAAATGATGAATCCCCCAGATGAGCCACTGGAGCTGCAGTCATCGGTTCTCAATCTGCTATATGAGGGCATTGCTCAGAACAGCGCAGGCAATGTTTTTGTTGCTATGGATGGGAGAAGTATAGAGGTCACTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCTGTCAAGCTGGGAATGAAGTATGATGTTGTCAAATCAGGGTCTGAAGTTCTCCATGTTGTCCCGTTCAATTCAGAAAAGAAGCGAGGAGGTGTTGCGATAAAGCAGGCTGACTCAGAAGTCTACATACACTGGAAAGGAGCGGCAGAGATGGTCTTATCTTCTTGTACAAAGTTTATGGGAATGAATTGTGAAGTGCACTCAATGGAAGGCAATGAGGATTATTTTAAGGCAGCTATTAATGATATGGCTGCAAGAAGTTTGCGTTGTGTTGCGATTGCATATAGACCATATGAATTAGAGAAGGTTCCAGTAGATGAACAAGGTTTGGATCAATGGGATTTGCCTGCTGATGATCTTATTCTGCTTGCAATTGTTGGTATAAAGGATCCTTGTCGTGCTGGTGTTAAAGAGGCTGTTAAAGTGTGCACGGATGCTGGCGTCAAGGTGCGCATGGTAACTGGAGACAATATACAGACCGCCAAAGCTATAGCAATAGAGTGTGGGATACTAAGCGCAACAGACGATGCTTCTGAGCCGACAGTAATTGAAGGAAAAGAATTCCGTGTATTGTCTGAGAAGGAAAGAGAACAAGTTGCCCCGAAAATAACGGTGATGGGGAGGTCTTCACCCAATGACAAACTCTTGCTTGTTCAAGCATTAAGAAAGGGAGGAGACGTCGTTGCTGTAACAGGCGATGGGACAAATGATGCCCCTGCACTCCACGAGGCAGATATCGGTCTTTCTATGGGCATACAAGGCACTGAAGTTGCGAAAGAAAGTTCTGATATTGTTATCTTGGATGATAACTTTGCTTCAGTCGTAAAGGTTGTCAGATGGGGGCGTTCTGTGTATGCAAACATTCAGAAGTTCATCCAGTTTCAGCTCACTGTAAATGTTGCCGCTCTTGTGATTAATGTTGTTGCAGCTGTGTCTTCCGGTGATGTTCCTTTAAATACTGTGCAGCTTCTCTGGGTTAACCTGATCATGGACACACTCGGTGCTCTAGCATTAGCTACTGAACCACCAACGGACCACTTGATGCATCGGTCACCTGTTGGGCGAAGGGAACCCCTTATAACCAATATCATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTTGCTGTCCTTCTTGTTCTCAACTTCTATGCCACTGATATTCTTCAATTGAATACTGATAGCAAGAAGCACGCCTTTAATGTGAAGAATACAGTGATTTTCAATGCCTTTGTCCTCTGCCAAATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAACGTATTCAGTGGCGTGACGAAAAATTACCTCTTTATGGGAATAGTTGGAACGACGTTCTTGCTTCAGATTATCATCGTCGAATTTCTAGGAAAATTTACTTCCACAGTAAAACTTGATGGGAAGCAATGGCTTATCTGCATTGCTATCGGCCTTGTGAGCTGGCCTCTGGCTGTCGTTGGCAAACTGATTCCAGTTCCTGAGACTCCATTGGGTAAATACTTCACAAAGCTAGTTCAACGGTACAGGAGGTCACATGGTGCTTAA | 3270 | 43.15 | MTSRGSSASGNGLFPLNASTSGRQDDVEAGLSSGKSINKEEEEEVSDPFDVDNTKNVPLEILKRWRQAALVLNASRRFRYTLDLKKEEEKEKRRRMIRAHSQVIRAALLFKLAGEQQTGFSVPPPTSTGDYGINLEHLVSLTREQNFSSLQQYGGVKGLSNLLKTNTDKGILGDETDLLKRRNTFGSNTYPRKKGRSFLRFLWEAWQDLTLIILIIAAVASLALGMKTKGVKEGWYDGGSISFAVFLVIMVTAVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDIVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKAPFMMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVSVLAILLGRYFTGNTHDANGNIEFQRGHTSLGDAVNGVIRIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGKKMMNPPDEPLELQSSVLNLLYEGIAQNSAGNVFVAMDGRSIEVTGSPTEKAILSWAVKLGMKYDVVKSGSEVLHVVPFNSEKKRGGVAIKQADSEVYIHWKGAAEMVLSSCTKFMGMNCEVHSMEGNEDYFKAAINDMAARSLRCVAIAYRPYELEKVPVDEQGLDQWDLPADDLILLAIVGIKDPCRAGVKEAVKVCTDAGVKVRMVTGDNIQTAKAIAIECGILSATDDASEPTVIEGKEFRVLSEKEREQVAPKITVMGRSSPNDKLLLVQALRKGGDVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYATDILQLNTDSKKHAFNVKNTVIFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGTTFLLQIIIVEFLGKFTSTVKLDGKQWLICIAIGLVSWPLAVVGKLIPVPETPLGKYFTKLVQRYRRSHGA | 1089 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5159023 | 5174066 | - | CmoCh08G008160.1 | Cmo08g00816 | 387549 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00816 | 1089 | SFLD | Haloacid Dehalogenase | 478 | 855 | - | - | |
Cmo08g00816 | 1089 | Pfam | haloacid dehalogenase-like hydrolase | 493 | 817 | - | - | |
Cmo08g00816 | 1089 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 503 | 700 | IPR023299 | GO:0000166 | |
Cmo08g00816 | 1089 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 153 | 1067 | IPR023298 | - | |
Cmo08g00816 | 1089 | PANTHER | CATION TRANSPORTING ATPASE | 35 | 1081 | - | - | |
Cmo08g00816 | 1089 | Gene3D | - | 177 | 372 | - | - | |
Cmo08g00816 | 1089 | Gene3D | - | 506 | 703 | IPR023299 | GO:0000166 | |
Cmo08g00816 | 1089 | Gene3D | - | 493 | 848 | IPR023214 | - | |
Cmo08g00816 | 1089 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cmo08g00816 | 1089 | Pfam | Cation transporting ATPase, C-terminus | 888 | 1065 | IPR006068 | - | |
Cmo08g00816 | 1089 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 35 | 1081 | - | - | |
Cmo08g00816 | 1089 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cmo08g00816 | 1089 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 47 | 89 | IPR024750 | GO:0005516 | |
Cmo08g00816 | 1089 | CDD | P-type_ATPase_Ca_PMCA-like | 178 | 936 | - | - | |
Cmo08g00816 | 1089 | PRINTS | Sodium/potassium-transporting ATPase signature | 239 | 259 | - | - | |
Cmo08g00816 | 1089 | PRINTS | Sodium/potassium-transporting ATPase signature | 489 | 510 | - | - | |
Cmo08g00816 | 1089 | PRINTS | Sodium/potassium-transporting ATPase signature | 615 | 633 | - | - | |
Cmo08g00816 | 1089 | PRINTS | Sodium/potassium-transporting ATPase signature | 875 | 896 | - | - | |
Cmo08g00816 | 1089 | SUPERFAMILY | Calcium ATPase, transduction domain A | 273 | 369 | IPR008250 | - | |
Cmo08g00816 | 1089 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 770 | 883 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo08g00816 | 1089 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 436 | 520 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo08g00816 | 1089 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 498 | 504 | IPR018303 | - | |
Cmo08g00816 | 1089 | Gene3D | - | 204 | 1057 | - | - | |
Cmo08g00816 | 1089 | Pfam | E1-E2 ATPase | 272 | 474 | - | - | |
Cmo08g00816 | 1089 | SUPERFAMILY | HAD-like | 494 | 908 | IPR036412 | - | |
Cmo08g00816 | 1089 | SMART | Cation_ATPase_N_a_2 | 152 | 226 | IPR004014 | - | |
Cmo08g00816 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 320 | 334 | - | - | |
Cmo08g00816 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 496 | 510 | - | - | |
Cmo08g00816 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 696 | 707 | - | - | |
Cmo08g00816 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 718 | 728 | - | - | |
Cmo08g00816 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 803 | 822 | - | - | |
Cmo08g00816 | 1089 | PRINTS | P-type cation-transporting ATPase superfamily signature | 827 | 839 | - | - | |
Cmo08g00816 | 1089 | Gene3D | - | 59 | 112 | - | - | |
Cmo08g00816 | 1089 | Pfam | Cation transporter/ATPase, N-terminus | 154 | 221 | IPR004014 | - | |
Cmo08g00816 | 1089 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 140 | 1067 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Cmo08g00816 | 1089 | SFLD | p-type atpase | 478 | 855 | IPR044492 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00762 | Cmo-Chr5:4277755 | Cmo08g00816 | Cmo-Chr8:5159023 | 0 | dispersed | |
Cmo08g00816 | Cmo-Chr8:5159023 | Cmo12g01137 | Cmo-Chr12:10355245 | 0 | dispersed | |
Cmo08g00816 | Cmo-Chr8:5159023 | Cmo12g00924 | Cmo-Chr12:8557941 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00816 | K01537 | - | csv:101214801 | 1845.48 |