Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00819 ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAGTCATGCACAGCATTCGATGCACACACAATCTGTGCAAGAACAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAATGAAGGTCACGGTATCATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCATATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGTGTTCCCTCAATCCCAATAACTAATCAACCAAATGATAGGCATCTCACTGATGAAGCATTTAACCAGGCACTTGCCATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAGTTCACATCTTCCAAACCCATTCAGGAAGATTCATTATCGGCCACAACAAGTTGGGAATCAAATGAGACTTGGTGTTCTGATGGAAATGGATCCCATCAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCCTGTGGACTCATGTGGGCAAACAAGTTTCCGTTTCTTCTAAATTGCGTTGCTGACTGCAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAAGCTTCAACAGGAATGAGAATGTTGTGCAGAATGGAGATTCTGAGTCCAATCCAAAAAGTGCATAG 945 45.19 MDGIHASDGRMHMSHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALAIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIQEDSLSATTSWESNETWCSDGNGSHQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKFPFLLNCVADCKGTLRDLSKAPNQGGQASSFNRNENVVQNGDSESNPKSA 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5200905 5206646 + CmoCh08G008190.1 Cmo08g00819 387552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00819 314 MobiDBLite consensus disorder prediction 284 314 - -
Cmo08g00819 314 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cmo08g00819 314 Pfam tify domain 84 112 IPR010399 -
Cmo08g00819 314 MobiDBLite consensus disorder prediction 1 15 - -
Cmo08g00819 314 Pfam GATA zinc finger 230 264 IPR000679 GO:0006355|GO:0043565
Cmo08g00819 314 PANTHER GATA TRANSCRIPTION FACTOR 28 4 300 - -
Cmo08g00819 314 Gene3D - 219 298 IPR013088 GO:0006355|GO:0008270
Cmo08g00819 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 264 - -
Cmo08g00819 314 SMART GATA_3 224 275 IPR000679 GO:0006355|GO:0043565
Cmo08g00819 314 MobiDBLite consensus disorder prediction 283 314 - -
Cmo08g00819 314 ProSitePatterns GATA-type zinc finger domain. 230 257 IPR000679 GO:0006355|GO:0043565
Cmo08g00819 314 PANTHER GATA TRANSCRIPTION FACTOR 28 4 300 IPR045280 GO:0006355
Cmo08g00819 314 ProSiteProfiles CCT domain profile. 154 196 IPR010402 GO:0005515
Cmo08g00819 314 CDD ZnF_GATA 230 264 IPR000679 GO:0006355|GO:0043565
Cmo08g00819 314 SMART tify_2 78 113 IPR010399 -
Cmo08g00819 314 Pfam CCT motif 154 196 IPR010402 GO:0005515
Cmo08g00819 314 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00819 - - - cmo:103500623 563.148
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00819 Cmo17g00616 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00819 Cmo-Chr8:5200905 Cmo11g01455 Cmo-Chr11:10243116 9.95E-69 dispersed
Cmo17g00616 Cmo-Chr17:6496734 Cmo08g00819 Cmo-Chr8:5200905 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g1014 . . . . . . . . Cmo08g00819 Cmo17g00616 . . . . . Cpe12g00537 Cpe17g00409 . . . . . . . . . . . . . . . . . . Lsi02g02837 Csa07g02285 . Cme01g02738 . . . . . . . . . . . Cma08g00850 Cma17g00633 Car08g00734 Car17g00597 . . Bhi09g00226 . . . . . . Cla09g00147 Cam09g0160 Cec09g0164 Cco09g0161 Clacu09g0166 . Cre09g0151 . . Chy01g02108 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00616 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cmo08g00819 CST 1 229 Tify Gene Family AT3G21175 55.5 4.4e-56 215.3
Cmo05g00563 CST 48 255 Tify Gene Family AT4G24470 56.9 7.8e-62 235.0
Cmo12g00161 CST 48 271 Tify Gene Family AT4G24470 53.1 1.4e-58 224.2
Cmo11g01455 . 89 302 Tify Gene Family AT4G24470 52.1 4.4e-49 192.6
Cmo19g00501 . 82 260 Tify Gene Family AT4G24470 59.2 2.4e-47 186.8
Cmo08g00819 CST 1 299 Tify Gene Family AT1G51600 56.6 5.0e-82 302.0
Cmo17g00616 CST 1 265 Tify Gene Family AT1G51600 59.3 1.0e-79 294.3
Cmo19g00501 . 79 280 Tify Gene Family AT1G51600 57.3 1.3e-53 207.6
Cmo11g01455 . 86 287 Tify Gene Family AT1G51600 57.1 6.3e-53 205.3
Cmo05g00561 . 71 246 Tify Gene Family AT1G51600 59.6 1.0e-50 198.0
Cmo05g00563 CST 72 250 Tify Gene Family AT1G51600 56.5 5.2e-47 185.7
Cmo12g00161 CST 371 544 Tify Gene Family AT1G51600 56.4 2.0e-46 183.7
Cmo05g00563 CST 48 255 Tify Gene Family AT4G24470 56.9 7.8e-62 235.0
Cmo12g00161 CST 48 271 Tify Gene Family AT4G24470 53.1 1.4e-58 224.2
Cmo11g01455 . 89 302 Tify Gene Family AT4G24470 52.1 4.4e-49 192.6
Cmo19g00501 . 82 260 Tify Gene Family AT4G24470 59.2 2.4e-47 186.8
Cmo08g00819 CST 1 299 Tify Gene Family AT1G51600 56.6 5.0e-82 302.0
Cmo17g00616 CST 1 265 Tify Gene Family AT1G51600 59.3 1.0e-79 294.3
Cmo19g00501 . 79 280 Tify Gene Family AT1G51600 57.3 1.3e-53 207.6
Cmo11g01455 . 86 287 Tify Gene Family AT1G51600 57.1 6.3e-53 205.3
Cmo05g00561 . 71 246 Tify Gene Family AT1G51600 59.6 1.0e-50 198.0
Cmo05g00563 CST 72 250 Tify Gene Family AT1G51600 56.5 5.2e-47 185.7
Cmo12g00161 CST 371 544 Tify Gene Family AT1G51600 56.4 2.0e-46 183.7
Cmo17g00616 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cmo08g00819 CST 1 229 Tify Gene Family AT3G21175 55.5 4.4e-56 215.3
Cmo17g00201 CST 1 180 Tify Gene Family AT4G14713 52.1 4.7e-45 178.7
Cmo08g01098 CST 1 180 Tify Gene Family AT4G14713 52.1 1.4e-44 177.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10267 PF06203 CCT 9.10E-15 CL0281 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00819 Cmo_Chr08 FPKM 0.0 0.0 7.957495 8.168247 7.977187 8.219583 8.575092 17.604021 19.380259 17.311428