Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00819 | ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAGTCATGCACAGCATTCGATGCACACACAATCTGTGCAAGAACAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAATGAAGGTCACGGTATCATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCATATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGTGTTCCCTCAATCCCAATAACTAATCAACCAAATGATAGGCATCTCACTGATGAAGCATTTAACCAGGCACTTGCCATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAGTTCACATCTTCCAAACCCATTCAGGAAGATTCATTATCGGCCACAACAAGTTGGGAATCAAATGAGACTTGGTGTTCTGATGGAAATGGATCCCATCAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCCTGTGGACTCATGTGGGCAAACAAGTTTCCGTTTCTTCTAAATTGCGTTGCTGACTGCAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAAGCTTCAACAGGAATGAGAATGTTGTGCAGAATGGAGATTCTGAGTCCAATCCAAAAAGTGCATAG | 945 | 45.19 | MDGIHASDGRMHMSHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALAIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIQEDSLSATTSWESNETWCSDGNGSHQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKFPFLLNCVADCKGTLRDLSKAPNQGGQASSFNRNENVVQNGDSESNPKSA | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5200905 | 5206646 | + | CmoCh08G008190.1 | Cmo08g00819 | 387552 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00819 | 314 | MobiDBLite | consensus disorder prediction | 284 | 314 | - | - | |
Cmo08g00819 | 314 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
Cmo08g00819 | 314 | Pfam | tify domain | 84 | 112 | IPR010399 | - | |
Cmo08g00819 | 314 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cmo08g00819 | 314 | Pfam | GATA zinc finger | 230 | 264 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo08g00819 | 314 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 4 | 300 | - | - | |
Cmo08g00819 | 314 | Gene3D | - | 219 | 298 | IPR013088 | GO:0006355|GO:0008270 | |
Cmo08g00819 | 314 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 226 | 264 | - | - | |
Cmo08g00819 | 314 | SMART | GATA_3 | 224 | 275 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo08g00819 | 314 | MobiDBLite | consensus disorder prediction | 283 | 314 | - | - | |
Cmo08g00819 | 314 | ProSitePatterns | GATA-type zinc finger domain. | 230 | 257 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo08g00819 | 314 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 4 | 300 | IPR045280 | GO:0006355 | |
Cmo08g00819 | 314 | ProSiteProfiles | CCT domain profile. | 154 | 196 | IPR010402 | GO:0005515 | |
Cmo08g00819 | 314 | CDD | ZnF_GATA | 230 | 264 | IPR000679 | GO:0006355|GO:0043565 | |
Cmo08g00819 | 314 | SMART | tify_2 | 78 | 113 | IPR010399 | - | |
Cmo08g00819 | 314 | Pfam | CCT motif | 154 | 196 | IPR010402 | GO:0005515 | |
Cmo08g00819 | 314 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g00819 | Cmo17g00616 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00819 | Cmo-Chr8:5200905 | Cmo11g01455 | Cmo-Chr11:10243116 | 9.95E-69 | dispersed | |
Cmo17g00616 | Cmo-Chr17:6496734 | Cmo08g00819 | Cmo-Chr8:5200905 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10267 | PF06203 | CCT | 9.10E-15 | CL0281 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00819 | - | - | cmo:103500623 | 563.148 |