Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00819 ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAGTCATGCACAGCATTCGATGCACACACAATCTGTGCAAGAACAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAATGAAGGTCACGGTATCATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCATATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGTGTTCCCTCAATCCCAATAACTAATCAACCAAATGATAGGCATCTCACTGATGAAGCATTTAACCAGGCACTTGCCATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAGTTCACATCTTCCAAACCCATTCAGGAAGATTCATTATCGGCCACAACAAGTTGGGAATCAAATGAGACTTGGTGTTCTGATGGAAATGGATCCCATCAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCCTGTGGACTCATGTGGGCAAACAAGTTTCCGTTTCTTCTAAATTGCGTTGCTGACTGCAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAAGCTTCAACAGGAATGAGAATGTTGTGCAGAATGGAGATTCTGAGTCCAATCCAAAAAGTGCATAG 945 45.19 MDGIHASDGRMHMSHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALAIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIQEDSLSATTSWESNETWCSDGNGSHQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKFPFLLNCVADCKGTLRDLSKAPNQGGQASSFNRNENVVQNGDSESNPKSA 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5200905 5206646 + CmoCh08G008190.1 Cmo08g00819 387552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00819 314 MobiDBLite consensus disorder prediction 284 314 - -
Cmo08g00819 314 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cmo08g00819 314 Pfam tify domain 84 112 IPR010399 -
Cmo08g00819 314 MobiDBLite consensus disorder prediction 1 15 - -
Cmo08g00819 314 Pfam GATA zinc finger 230 264 IPR000679 GO:0006355|GO:0043565
Cmo08g00819 314 PANTHER GATA TRANSCRIPTION FACTOR 28 4 300 - -
Cmo08g00819 314 Gene3D - 219 298 IPR013088 GO:0006355|GO:0008270
Cmo08g00819 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 264 - -
Cmo08g00819 314 SMART GATA_3 224 275 IPR000679 GO:0006355|GO:0043565
Cmo08g00819 314 MobiDBLite consensus disorder prediction 283 314 - -
Cmo08g00819 314 ProSitePatterns GATA-type zinc finger domain. 230 257 IPR000679 GO:0006355|GO:0043565
Cmo08g00819 314 PANTHER GATA TRANSCRIPTION FACTOR 28 4 300 IPR045280 GO:0006355
Cmo08g00819 314 ProSiteProfiles CCT domain profile. 154 196 IPR010402 GO:0005515
Cmo08g00819 314 CDD ZnF_GATA 230 264 IPR000679 GO:0006355|GO:0043565
Cmo08g00819 314 SMART tify_2 78 113 IPR010399 -
Cmo08g00819 314 Pfam CCT motif 154 196 IPR010402 GO:0005515
Cmo08g00819 314 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00819 Cmo17g00616 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00819 Cmo-Chr8:5200905 Cmo11g01455 Cmo-Chr11:10243116 9.95E-69 dispersed
Cmo17g00616 Cmo-Chr17:6496734 Cmo08g00819 Cmo-Chr8:5200905 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10267 PF06203 CCT 9.10E-15 CL0281 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00819 - - cmo:103500623 563.148