Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00822 ATGCCGTCCGTCTATGGAGATCGGTTGACCACTTTTGAGGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGATTAGAAGGAGATTCTGCCACAATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCGTAAACCATTGTCAGTGGAGTTAGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCGAAGAGATCAGGAGATGTCTACATTCCTCGTGGTGTTGCTGTCCCTGCACTTGACAAAGACACACTTTGGGATTTTCAACCCAAAAACCTAGGTGAGGGCGACTTATTGACAGGTGGAGACTTGTATGCTACTGTCTTTGAGAATAGTCTAATGGAGCACCATATTGCACTTCCTCCTGATTCTATGGGGAAAATTACCTATGTTGCACCACCTGGTCAATATTCACTAAAGGACACTGTTTTAGAGCTTGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACATGGCCTGTACGTACTCCTAGACCAGTTGCATCTAAGCTTGCGGCCGATACCCCTCTTTTAACTGGCCAGCGTGTTCTTGATGCCCTTTTCCCTTCTGTTCTTGGTGGAACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATACTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTACCTGATGGCCGTGAAGAATCTGTCATGAAGCGTACGACCCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATTACTTTGGCTGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCAACATCCCGATGGGCAGAAGCACTGCGTGAAATATCAGGACGACTGGCTGAAATGCCTGCAGATAGTGGATATCCTGCATACCTAGCAGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAATGCCTTGGTGGGCCAGAACGAACTGGTAGTGTTACCATCGTCGGTGCAGTTTCTCCACCAGGAGGAGATTTCTCTGATCCCGTGACATCTGCTACCCTCAGTATCGTCCAGGTTTTCTGGGGTCTAGATAAAAAGCTTGCCCAGAGGAAGCACTTCCCATCCGTAAACTGGCTAATTTCGTACTCAAAATACTCTACTGCATTGGAATCTTTCTACGAGAAGTTTGATCCAGATTTTATCAGCATCAGGACAAAGGCTCGAGAAGTTCTCCAGAGGGAAGATGACCTCAATGAAATAGTCCAACTTGTAGGGAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTCTGAGGGAGGACTATCTCGCTCAGAATGCATTTACTCCGTATGACAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGCAATATCATCCATTTCTATAATTTGGCTAATCAGGCCGTAGAGAGGGGAGCAGGTATGGATGGCCAAAAGATAACATACACTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGCCTGGTGTCTCAGAAGTTCGAGGATCCAGCTGAAGGAGAAGCAGCTCTTATTGAGAAATTTAAGAAGCTACATGAAGATCTTACAAATGGTTTCCGTGCTCTCGAGGATGAAACTCGGTAG 1872 44.71 MPSVYGDRLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDTLWDFQPKNLGEGDLLTGGDLYATVFENSLMEHHIALPPDSMGKITYVAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEAALIEKFKKLHEDLTNGFRALEDETR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5214253 5221330 - CmoCh08G008220.1 Cmo08g00822 387555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00822 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034|GO:0046961
Cmo08g00822 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Cmo08g00822 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Cmo08g00822 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
Cmo08g00822 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Cmo08g00822 623 Coils Coil 601 621 - -
Cmo08g00822 623 Gene3D - 459 611 IPR024034 -
Cmo08g00822 623 Gene3D - 134 205 - -
Cmo08g00822 623 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 20 611 IPR005725 GO:0033180|GO:0046961|GO:1902600
Cmo08g00822 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Cmo08g00822 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Cmo08g00822 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Cmo08g00822 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Cmo08g00822 623 Gene3D - 91 457 IPR027417 -
Cmo08g00822 623 Gene3D - 20 89 IPR023366 -
Cmo08g00822 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 IPR022878 GO:0046034|GO:0046961
Cmo08g00822 623 CDD V_A-ATPase_A 88 460 - -
Cmo08g00822 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Cmo08g00822 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00822 Cmo-Chr8:5214253 Cmo15g00978 Cmo-Chr15:5158765 4.86E-26 dispersed
Cmo17g00614 Cmo-Chr17:6485727 Cmo08g00822 Cmo-Chr8:5214253 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00822 K02145 - csv:101216234 1219.53