Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00832 ATGCCCTTATCCTTGCCTTTTGAAGACATTCGTCCAAATGGGGTATTGAATTTCAGTTCTGTCTCCGATTCTCCGCCGCCGCCTCCACAACTCCGCCGTCACAACTGGAGTTGCTGCACTGATAGTACCAATCTGCTCAAAGATATTTGCTATGTGGGTGCTGCTGAACCCACCTCTGTTCTCGACACTCGAAGAAGCCCTAGCCCTCCCACTTCCTCTTCCACACTGTCTTCGTCTTTCGGCGGCGGTGGTGGTGGTAACGCCTCCACCGACACTGCAGTGGTTGCGCCCCCATCTTCTCTCCCTCAAAACCCTTCTCCTTTAGACAAATGCGGCGGCGCCGGTGGTGGTGGCGCCCTTGGAATTGATGATTGGGAAAGTGTTTTGCCGGAATCCCCTGGCCAAGGTCCCTCCGTTCTTGGGTTAATTATGAGTGATGTTGAAGATCCATCTTTGGGATTGAATAAGCTACTGCAGAGCGGAGGCGGCGGCGGCGGCGGTGGTGGTTCTCATCTGGACTTGGACTTTTCCGGTGTCGATCATGGTTTCGTCTTCGAACCGAATACTCTCGCCGGAGAATCTATTGTTGACCCATCTTGCAACGATTTCCATAACGGGAGACTGTTTCCCGGCGTGTTTCATAATCAGAATCAAATGATGGAAGCGATTGATGAGAAGCCACAGATTTTCAATTCTCCCCAAGTTATGATGAATCAAAATCAAACCCAGTTCACTCAGAATCCAGCTCTGTTTATGCCTCTGCCTTATGGCTCCCCTGTTCAAGATCACCATCAAAACCACCACCACAGCCTGCTGGTTCCGCCGCCTGCTAAACGGTTCAATTCGGGTTCAATTGGGGCTAGTTATCAAGAAATTATGAATCGTAGACAACAACAGGCTCAACAAGTTCAAGTTCAGATGTTTGCTCAGCAGCAGAGGGCATCAATAGCAGCAGCTATGGCAAAACAGAAAATGGTGGATGAAGAAATAGCAAATCAACAGCTCCAACCAGCCATTTCCGACCAGCTATTCAAAGCCATAGAGCTAATCGAAACAGGGAATTCTGTACTCGCGCAAGGGATATTGGCGCGGCTCAATCATCATCTCTCTTCCCCCATTGGGAAGCCCTTTCAAAGGGCTGCATTCTACTTCAAGGAGGCGTTGCAATTGCTCCTTCAAAACCCTTCAAATCCATCCTCCAATCTCATCTCCTCCCCTTATAGCATCATTTTCAAGATTGCTGCTTACAAATCCTTCTCTGAGCTCTCCCCTGTTCTTCAGTTCGCTAATTTCACCTCTAACCAAGCCCTCCTCGAGGCCTTCAATGGCTTCAATCGACTTCACATAATCGATTTCGATATCGGATACGGCGGGCAATGGGCTTCTTTGATGCAGGAGCTTGCCTTGAGAAATGGCAGTGGGTTTCTCAAAATCACAGCCTTTGCTTCGACTTCCACACATGACGAATTTGAGCTGGGATTTACACAAGAAAACCTGAAGAATTTCGCTAATGATCTTGGTATTGGGTTTGAGCTAGAAATTCTTAACATGGAGTCTTTGAATTCTGGTTCATGGCCATTGCCACTAAATGTTACAGAAAATGAGGCGATTGCGGTGAATCTCCCTGTTGGTTCGTTCTTCAACGACGCACTTCCATTGCCGATGGTTCTCCGTTTCGTGAAGCATCTATGCCCGAAAATCGTTGTGTGTGTTAACCGAGGGGGGAACCGAATGGATGTGGCGTTCCCTCAACGTGTAATCAATGCGCTGCATTGTTATTCAGGGTTGCTTGAATCAATGGATGCAGTGACTGTGAATATGGATACCCAAATGAAGATCGAGAGGTATCTACTGCAACCGGGCATCGAGAAGCTGGTGAGGAGTGGTGAGGCTTGGAAGGAAAGGCTGCCTCCATGGAGATCTCTGCTTTTATCATCCGGATTCTCCCCATTGACATTCAGTAACTTCACGGAGTCGCAGGCCGATTGTTTGGTGCAGCGAACGCCGGTGCAGGGATTTCATGTCGAGAAGAGACAGTCGTCGCTTGTTTTATGCTGGCAGCGAAAGGAGCTCATGTCGGTCTCGGCTTGGAGGTGTTGA 2100 48.81 MPLSLPFEDIRPNGVLNFSSVSDSPPPPPQLRRHNWSCCTDSTNLLKDICYVGAAEPTSVLDTRRSPSPPTSSSTLSSSFGGGGGGNASTDTAVVAPPSSLPQNPSPLDKCGGAGGGGALGIDDWESVLPESPGQGPSVLGLIMSDVEDPSLGLNKLLQSGGGGGGGGGSHLDLDFSGVDHGFVFEPNTLAGESIVDPSCNDFHNGRLFPGVFHNQNQMMEAIDEKPQIFNSPQVMMNQNQTQFTQNPALFMPLPYGSPVQDHHQNHHHSLLVPPPAKRFNSGSIGASYQEIMNRRQQQAQQVQVQMFAQQQRASIAAAMAKQKMVDEEIANQQLQPAISDQLFKAIELIETGNSVLAQGILARLNHHLSSPIGKPFQRAAFYFKEALQLLLQNPSNPSSNLISSPYSIIFKIAAYKSFSELSPVLQFANFTSNQALLEAFNGFNRLHIIDFDIGYGGQWASLMQELALRNGSGFLKITAFASTSTHDEFELGFTQENLKNFANDLGIGFELEILNMESLNSGSWPLPLNVTENEAIAVNLPVGSFFNDALPLPMVLRFVKHLCPKIVVCVNRGGNRMDVAFPQRVINALHCYSGLLESMDAVTVNMDTQMKIERYLLQPGIEKLVRSGEAWKERLPPWRSLLLSSGFSPLTFSNFTESQADCLVQRTPVQGFHVEKRQSSLVLCWQRKELMSVSAWRC 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5334318 5336417 + CmoCh08G008320.1 Cmo08g00832 387565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00832 699 MobiDBLite consensus disorder prediction 60 116 - -
Cmo08g00832 699 Pfam GRAS domain family 341 698 IPR005202 -
Cmo08g00832 699 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 50 698 IPR005202 -
Cmo08g00832 699 PANTHER SCARECROW-LIKE PROTEIN 6 50 698 - -
Cmo08g00832 699 ProSiteProfiles GRAS family profile. 330 698 IPR005202 -
Cmo08g00832 699 MobiDBLite consensus disorder prediction 61 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00832 Cmo-Chr8:5334318 Cmo16g01195 Cmo-Chr16:8521675 4.63E-164 dispersed
Cmo17g00454 Cmo-Chr17:3141301 Cmo08g00832 Cmo-Chr8:5334318 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10269 PF03514 GRAS 7.80E-96 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00832 - - csv:101214718 965.681