Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00838 ATGAGAAACCCCCACTTCCTTCTAGTATGCTTCCCTTCCCAAGGATACATAAACCCTTCCCTCCAACTCGCCAAGCGACTCATACACCTTAACATTGATGTCACCTTCGCCACCACCATCGCCGCCGCCCGCCGCATGAACAACAACGCCCAACAAACTCCAACAACACAGGGCTTGTCTTTCGCCACGTTCTCCGACGGCTTCGACGACGACAATCTCAAACTCAGCGCCAACATCACCCACTTCTTCTCTGAACTCAAACGCTGCGGCTCTCAATCTCTCACCCACCTCATCACCTCCGCAGCCAACAAAGGCCGCCCCTTCACTTTCCTAATCTACGGCCTCTTACTCAATTGGGCAGCCGACGTCGCCACTTCCTTCAATATACCCTCAGCCCTTTTCTTCGCTCAGCCTGCAACCGTCTTAGCTTTGTACTTCCATTACTTCCATGGCTATGAAGAACCCATTTGCAACAAACTCCAAACCCCATCTTCGTGCATAGAATTACCAAACTTGCCATTGTTTACAACTCATGATATGCCATCTTTCTTCTCCCCATGTGGGCCCCATGCGTTTATTATTCCTCCAATGAGAGAGCAACTCGAATTCCTCGGTGGACAAACTCGGTCAAAAGTCTTAGTCAACACATTTGACACGTTGGAAACTGATGCCTTGCGAGCCATTGATGAATTGAAAATGATTGCAATCGGACCCTTGATTCCTTCTAGTCATGATGATGGTGGCAATCTTTTCCACGTGTCGAGTGAGGATTATATCGGATGGTTGAGCTCCAAGGCGGAGCGCTCGGTTGTGTATGTATCATTTGGGTCTATTTGTGAGTTGTGTGAGGAGCAAGAGGAGGAGCTTTTGAATGGTTTGTTGGAGAGTGGACGGCCATTCTTGTGGGTTGTGAGATCGAATCACGATGAGGAGAGGTTGAAGAAGGTGGGAATGAAAGGGAAAATTGTGTCGTGGTGTCGGCAAATTGAAGTGTTGAAGCATCCGTCGGTGGGTTGTTTTGTTACTCATTGTGGGTGGAATTCGACTATTGAAAGCTTGAGTCTTGGGGTGGCGGTGGTTGGGTTTCCGCAGCAGATAGATCAGATGACGAATGCGAAGCTTGTGGAAGATTTGTGGAAGACGGGAGTGAGAGTGAAGGGTAATTCAGAAGGGGTTGTTGAGAGGGGAGAGATTAGGCGATGTTTGGATTTGGTGATGGAGAATGAAGAGATTGAGAGGAATGTGAAGGTGTGGAAGGAATTGGGTAGGCAAGCTGTGGAGGAAGGTGGGTCGTCAACTTCGAATCTTCAGGCTTTTGTTGCTGAGATTGATGGTGGTGGTAGGGATTGA 1350 48.67 MRNPHFLLVCFPSQGYINPSLQLAKRLIHLNIDVTFATTIAAARRMNNNAQQTPTTQGLSFATFSDGFDDDNLKLSANITHFFSELKRCGSQSLTHLITSAANKGRPFTFLIYGLLLNWAADVATSFNIPSALFFAQPATVLALYFHYFHGYEEPICNKLQTPSSCIELPNLPLFTTHDMPSFFSPCGPHAFIIPPMREQLEFLGGQTRSKVLVNTFDTLETDALRAIDELKMIAIGPLIPSSHDDGGNLFHVSSEDYIGWLSSKAERSVVYVSFGSICELCEEQEEELLNGLLESGRPFLWVVRSNHDEERLKKVGMKGKIVSWCRQIEVLKHPSVGCFVTHCGWNSTIESLSLGVAVVGFPQQIDQMTNAKLVEDLWKTGVRVKGNSEGVVERGEIRRCLDLVMENEEIERNVKVWKELGRQAVEEGGSSTSNLQAFVAEIDGGGRD 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5391991 5393340 - CmoCh08G008380.1 Cmo08g00838 387571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00838 449 CDD GT1_Gtf-like 4 435 IPR002213 GO:0008194
Cmo08g00838 449 Gene3D Glycogen Phosphorylase B; 247 424 - -
Cmo08g00838 449 Gene3D Glycogen Phosphorylase B; 9 436 - -
Cmo08g00838 449 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 261 415 IPR002213 GO:0008194
Cmo08g00838 449 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 4 442 - -
Cmo08g00838 449 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 4 442 - -
Cmo08g00838 449 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00838 - - - csv:101213749 561.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00838 Cmo-Chr8:5391991 Cmo08g00841 Cmo-Chr8:5416717 1.07E-146 dispersed
Cmo08g00838 Cmo-Chr8:5391991 Cmo08g00839 Cmo-Chr8:5403120 1.00E-141 tandem
Cmo17g00448 Cmo-Chr17:3048478 Cmo08g00838 Cmo-Chr8:5391991 1.40E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1051 . . . . . . . . Cmo08g00838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g02119 . . . Hepe03g0632 . Lcy13g0892 Cla07g01594 Cam07g1691 Cec07g1787 Cco07g1749 Clacu07g1674 Cmu07g1641 Cre07g2015 Lsi09g01618 . . Cme11g02216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007278 0 2 0 0 0 1 0 1 1 2 1 1 2 2 2 2 1 0 1 1 2 1 1 2 0 2 2 1 2 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00838 Cmo_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.149342 0.0