Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00839 ATGGACAACACAGCACCCCACGGCCACCGTGTGCTGTTGATAACATACTCTGCTCAAGGACATATCAACCCCGCCCTCGAATTCGCCAAACGCCTCACGCGCCGCCGCATTGATGTCACCTTCGTCACCTCTCTCTCCGCCTATCGCCGCATGGGCAAAACCCCGACGCTGCCTCACGTGTCATTCGCCTCGTTCTCCGATGGCTATGACGACGGTTTCAAACAAGGGGACGACATTAATCATTTCATGTCGGAGCTGGAGCGACGTGGGTCTCAAGCTATTAAGGATATGATTGTGGCGGGTGTTGAACAAGGCCAACCCTTCACTTGCATTGTTTATTCTATACTCCTCCCGTGGGTGGCTACAGTGGCGCGTTCCCTCCACCTTCCGGCGATTCTTCTTTGGATTCAACCAGCTATTGTTTTTGCTTTGTACTACTATTACAACTATGGTTATCATGACATAATTCAAAGCGCATCCGCTGATCCGTTGGCAACTATTCAACTACCTGGCCTTCCATTGTTAACGGCTCGTGATCTTCCTTCCTTCTTTGGTTCTTCAGATGCTTATGAATTTGCTCTCCCAATATTTCGGAGGCAATTTGAATTACTCGAGCAAGAGACCAACCCAATGGTTGTAATCAACACATTCGACGAATTGGAGCACGACGCGCTTAGAGCGATTAGCAAGTTCAATTTGATACCCGTCGGACCACTGATTCCATCAGAAGCCTCCTCCCAATGTGATCTGTTTCAATCTACTACCAGTTATATCGACTGGTTGAACTCAAAACCTAAAGGGTCTGTAATTTACTTATCGTCGGGAAGCATGTCGACGTTATCGAAGCACCAAAAAGAGGAGATAGCAAGAGGGTTATTAAGCTGTGGACGACCATTTTTGTGGGTGATTCGAGACATTGAAGAAGTAAATACTTTGAGTTGTAGGGAGGAATTGGAAGGTTTAGGAAAGATAGTGCCATGGTGTTCACAAATAGAGGTTCTATCAAGGCCAGCGACAGGATGTTTTCTAACACATTGTGGATGGAATTCGACGTTGGAGAGTTTGGTATGCGGGGTACCGGTGGTGGTGTTTCCACAGTGGTCGGATCAGGGGACGAATGCGAAGATCATTCAAGACATGTCGGAGACGGGAGTGAGGTTGGAGGTGGGGATGGATGGCGTGGTTAAGCGAGAGGAGATAAAAAGATGCTTGGAGTTGGTGATGGGAGATTCAAAGAAAGGAGAAGAGATAAGGAGGAATGTGGTGAAATGGAAGGAGTTGGCCAAGGGAGCCACCGCCCACGGCGGTTCTTCATATTCAAACTTCAAGGCTTTTGTGGACCAAGTTTGTCCTTAA 1356 47.86 MDNTAPHGHRVLLITYSAQGHINPALEFAKRLTRRRIDVTFVTSLSAYRRMGKTPTLPHVSFASFSDGYDDGFKQGDDINHFMSELERRGSQAIKDMIVAGVEQGQPFTCIVYSILLPWVATVARSLHLPAILLWIQPAIVFALYYYYNYGYHDIIQSASADPLATIQLPGLPLLTARDLPSFFGSSDAYEFALPIFRRQFELLEQETNPMVVINTFDELEHDALRAISKFNLIPVGPLIPSEASSQCDLFQSTTSYIDWLNSKPKGSVIYLSSGSMSTLSKHQKEEIARGLLSCGRPFLWVIRDIEEVNTLSCREELEGLGKIVPWCSQIEVLSRPATGCFLTHCGWNSTLESLVCGVPVVVFPQWSDQGTNAKIIQDMSETGVRLEVGMDGVVKREEIKRCLELVMGDSKKGEEIRRNVVKWKELAKGATAHGGSSYSNFKAFVDQVCP 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5403120 5404702 + CmoCh08G008390.1 Cmo08g00839 387572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00839 451 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 10 450 - -
Cmo08g00839 451 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 260 412 IPR002213 GO:0008194
Cmo08g00839 451 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 9 448 - -
Cmo08g00839 451 Gene3D Glycogen Phosphorylase B; 245 430 - -
Cmo08g00839 451 ProSitePatterns UDP-glycosyltransferases signature. 327 370 IPR035595 -
Cmo08g00839 451 Gene3D Glycogen Phosphorylase B; 14 442 - -
Cmo08g00839 451 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 9 448 - -
Cmo08g00839 451 CDD GT1_Gtf-like 10 434 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00839 - - - csv:101203309 637.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00839 Cmo-Chr8:5403120 Cmo08g00841 Cmo-Chr8:5416717 0 dispersed
Cmo08g00838 Cmo-Chr8:5391991 Cmo08g00839 Cmo-Chr8:5403120 1.00E-141 tandem
Cmo08g00839 Cmo-Chr8:5403120 Cmo08g00840 Cmo-Chr8:5407125 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1056 . . . . . . . . Cmo08g00839 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0540 Cone15ag0563 Cone18ag0904 . . . . . Blo02g00397 . . . . . . . . . . Cma08g00869 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002292 1 2 2 2 2 2 0 2 2 1 2 2 2 1 2 4 2 8 2 2 1 3 1 1 1 2 1 1 1 8 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00839 Cmo_Chr08 FPKM 0.0 0.0 0.0 0.0 0.729528 0.251806 0.316151 0.0 0.141926 0.115505