Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00862 ATGGAGTCCGGTTCTTTTGATCAGAACATCAGGGGAGTGCCCACCCATGGCGGTCGATACATTCAATACAATTTGTATGGGAATCTCTTTGAAGTTTCTAGGAAGTATATTCCACCCATAAAGCCAGTTGGTAGAGGAGCTTATGGTATTGTCTGTGCTGCTACTAATTCAGAAACAAATGAGGAGGTTGCTATTAAGAAGGTTGGCAATGCATTTGACAATAGGATTGATGCTAAAAGAACCTTGCGGGAAATCAAGCTTCTTCGTCACATGGATCATGAAAATATCATTGCTCTTAAAGATATTATAAGACCTCCTCAGAAGGAGAATTTCAACGATGTGTACCTTGTTTATGAATTGATGGATACTGATCTAAATCAGATAATACGGTCCAACCAATCGTTGACTGATGACCATTGTCGGTTCTTTCTGTACCAGTTGTTACGAGGCCTAAAATACGTACATTCCGCTAATGTTCTACATCGTGATCTGAAACCAAGCAATTTGTTCCTCAATGCAAATTGTGACCTAAAACTTGGGGACTTTGGGCTTGCAAGGACAACTTCTGAGACTGATTTTATGACTGAGTACGTTGTTACTCGGTGGTACCGTGCACCGGAATTGCTTCTTAATTGTTCGGAATACACTGGAGCAATAGACATTTGGTCTGTTGGCTGTATACTTGGTGAAATTATGCACAGAAAACCACTGTTTCCTGGAAAAGATTATGTCCATCAGCTAAAACTTATTACTGAGCTCATTGGGTCACCTGACGACTCGAGCCTCGGGTTCTTACGAAGTGACAATCCACGAAAATATTTTAAAAATATTCCTCACTTCCCGAGGCAACCGTTCTCCACTAAATTTCCTACGATGTCTCCTGCTGCTATCGACTTGCTGGAGAAGATGCTTGTCTTTGATCCTACTAAACGCATTACAGTTGATGAGGCGTTGAGGCATCCATACTTGGCACCTCTTCATGATATCAATGAGGAGCCAGTATGTCCGAGGCTTTTCAGTTTTGACTTCGAGCAACCGTCGTTTACCGAAGAAAACATCAAGGAACTTGTATGGAGAGAATCCGTGAAGTTCAACCCGGATCCTGCTTGA 1110 41.98 MESGSFDQNIRGVPTHGGRYIQYNLYGNLFEVSRKYIPPIKPVGRGAYGIVCAATNSETNEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENIIALKDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNQSLTDDHCRFFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKLGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIMHRKPLFPGKDYVHQLKLITELIGSPDDSSLGFLRSDNPRKYFKNIPHFPRQPFSTKFPTMSPAAIDLLEKMLVFDPTKRITVDEALRHPYLAPLHDINEEPVCPRLFSFDFEQPSFTEENIKELVWRESVKFNPDPA 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5567966 5572673 + CmoCh08G008620.1 Cmo08g00862 387595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00862 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cmo08g00862 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 368 - -
Cmo08g00862 369 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00862 369 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00862 369 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00862 369 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Cmo08g00862 369 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Cmo08g00862 369 CDD STKc_TEY_MAPK 30 366 - -
Cmo08g00862 369 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Cmo08g00862 369 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Cmo08g00862 369 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo08g00862 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 14 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01463 Cmo-Chr2:8598641 Cmo08g00862 Cmo-Chr8:5567966 0 dispersed
Cmo05g00267 Cmo-Chr5:1150727 Cmo08g00862 Cmo-Chr8:5567966 2.41E-153 dispersed
Cmo08g00862 Cmo-Chr8:5567966 Cmo12g00069 Cmo-Chr12:367060 0 dispersed
Cmo16g00687 Cmo-Chr16:3402841 Cmo08g00862 Cmo-Chr8:5567966 2.96E-147 dispersed
Cmo15g01314 Cmo-Chr15:9024086 Cmo08g00862 Cmo-Chr8:5567966 0 wgd
Cmo17g00427 Cmo-Chr17:2848649 Cmo08g00862 Cmo-Chr8:5567966 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74534 PF00069 Pkinase 4.80E-72 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00862 K20600 - csv:101215189 712.605