Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00866 ATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACAATATTCCTCCATTTACTCTCTCTCCTGGACTTACTAAAACGCCTAATTCTGTACCTGTTCCGCCTCCTCGGCCTCCCGGAATTTCTCTACTCCGACGCCGCCATCTCGCGGGAGGGTGGGATTCCGTTGAACCCGCCAGCCTCCGCCGTGGTCCTGCGCGAATTCCTCCCCGTAGTGAAATTCTCGGATGTCCCCCAGGCGGCGGAGGCGGCGGCAGAGAGCTGCGCCGTATGCCTGTACGAATTCGAGGGAGCAGAGGAGATCCGGTGGCTGACGAACTGCAAGCACATATTCCATAGAGGGTGTGTGGACCGTTGGATGGATCATGATCAGAAGACATGTCCGCTTTGTAGAACGCCGTTCGTGCCTGATGGGATGATGGATGAGTTCAATCAACGGCTCTGGGCCGCCTCTGGAATTGCTGAGTTTGATTCTGAGTTCAACTCGGTTTTAGGTTAG 501 55.89 MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLYSDAAISREGGIPLNPPASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5598545 5599045 + CmoCh08G008660.1 Cmo08g00866 387599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00866 166 ProSiteProfiles Zinc finger RING-type profile. 89 132 IPR001841 -
Cmo08g00866 166 PANTHER BRH1 RING FINGER PROTEIN 1 160 - -
Cmo08g00866 166 CDD RING-H2 89 132 - -
Cmo08g00866 166 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 160 - -
Cmo08g00866 166 Pfam Ring finger domain 88 132 IPR001841 -
Cmo08g00866 166 SUPERFAMILY RING/U-box 88 138 - -
Cmo08g00866 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 138 IPR013083 -
Cmo08g00866 166 SMART ring_2 89 131 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00866 Cmo-Chr8:5598545 Cmo14g02114 Cmo-Chr14:15301521 1.05E-42 dispersed
Cmo15g01308 Cmo-Chr15:8984568 Cmo08g00866 Cmo-Chr8:5598545 2.20E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00866 K16281 - csv:101220424 241.121