Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00870 ATGGCTTCTCTTCTTCTCTTTCTCCTCCTTGTGGTCTTCACTCTCCCATCGGCCTCCCTCGCCGTCACGAAAGCTGAAGTTTCGTATCTCATTGGTCGTCAACTTTTGGCTCTAAGAGAACACGATGATCTCCCAGATAACTATAAATATGATGCTGAAATTGATCCCCATGAAACTTTCATAAATGAGAGGTTGAAGAAGGCTTTTGTTGCCCTCAAAGCTTGGAAATCCGCCATATATTCTGACCCATATAACTTCACTGAAAATTGGGTTGGCAATGATGTCTGTCTTTATAGGGGCGTTTTTTGTACTACGGCGCTTGATGACTCCACCGTTGAGGTTGTGGCTGGCATTGATTTGAACCATGCCGACATTGCAGGCTACTTGCCACCCGAGCTTGGACTCTTGACAGATTTGGCATTATTCCATATCAACTCTAATAGGTTTTGTGGGATAATTCCTCGTAGCTTTTCTAAGCTCACTCTCATGTTTGAGTTCGATGTCAGTAACAACCGGTTCGTTGGCCATTTTCCAGAGGTTGTCTTTCATTGGCGTATCGCTAAGTTCCTCGATCTTAGGTTCAACGACTTTGAAGGAGAAGTCCCACCGGCACTCTTCACTATGACCTTCGACGCCATATTCTTAAACAACAATAGATTTAGTTCCTTCATCCCGGATACCATTGGAAACTCCACTGTATCCCTTGTGTCCTTTGCGTACAACTACTTCCATGGCTGCATTCCTAGTTCGGTCGGCCAAATGAGCAGCCTCAACCAGGTTCTCTTTATCGGCAACAAACTCCATGGCTGTCTTCCAGTCGAGATCGGAAAGCTTGTCAATCTAACGGTGCTTGATATCAGCAATAATAGCTTTCCTGGCTGGTTGCCTGCGTTATCGGGGCTCAAGAATTTGCAGTATTTGGACGTTAGTTACAATGAATTTAGAGGCTCTGTTTCTGGGGAGATATGCAAATTGCCCCATTTGGGAAACTTTAATTTCTCCTTTAATTATTTTGATAAGCAAGATGCAGAGTGTGTGGCACCTAAAGATTCAAAAAAGGTTTTTGATGATGTCCATAATTGCTTACTTAATCGCCCGGAGCAAAGAGATGCTGAGACTTGTAGCTCTTTTATGATGAAATCGGTGGAGTGTAGAAATTGTGGTGAAGATCCTACTACAAGGTCTCCGGTGGTGGTTCGTACACCGCTACCAACTCCAGAATCTCATCATCCAGTTCCATCCTCACCTCATCATCATCACACAGGCCGAGACTCAGGCGGGCGCACCCCCTGCTCCCCAGGTCGAGACTCAGGCGGGCGCACCCCCTGCTCCCCAGGTCGAGACTCAGGCGGGCGCACCCCCTGCACCCCAGGTCGAGACTCAGGCGAGCGCACCCTCTGCCTCCCAAGTTGA 1413 47.13 MASLLLFLLLVVFTLPSASLAVTKAEVSYLIGRQLLALREHDDLPDNYKYDAEIDPHETFINERLKKAFVALKAWKSAIYSDPYNFTENWVGNDVCLYRGVFCTTALDDSTVEVVAGIDLNHADIAGYLPPELGLLTDLALFHINSNRFCGIIPRSFSKLTLMFEFDVSNNRFVGHFPEVVFHWRIAKFLDLRFNDFEGEVPPALFTMTFDAIFLNNNRFSSFIPDTIGNSTVSLVSFAYNYFHGCIPSSVGQMSSLNQVLFIGNKLHGCLPVEIGKLVNLTVLDISNNSFPGWLPALSGLKNLQYLDVSYNEFRGSVSGEICKLPHLGNFNFSFNYFDKQDAECVAPKDSKKVFDDVHNCLLNRPEQRDAETCSSFMMKSVECRNCGEDPTTRSPVVVRTPLPTPESHHPVPSSPHHHHTGRDSGGRTPCSPGRDSGGRTPCSPGRDSGGRTPCTPGRDSGERTLCLPS 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5621196 5622985 - CmoCh08G008700.1 Cmo08g00870 387603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00870 470 Gene3D Ribonuclease Inhibitor 68 358 IPR032675 -
Cmo08g00870 470 SUPERFAMILY L domain-like 70 363 - -
Cmo08g00870 470 MobiDBLite consensus disorder prediction 389 470 - -
Cmo08g00870 470 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 5 420 - -
Cmo08g00870 470 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 5 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00870 - - - cmos:111464211 845.114
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00870 Cmo-Chr8:5621196 Cmo17g00425 Cmo-Chr17:2835184 5.34E-177 dispersed
Cmo08g00869 Cmo-Chr8:5609995 Cmo08g00870 Cmo-Chr8:5621196 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo01g01932 . 61 291 Leucine-rich Repeat extension Gene Families AT1G62440 67.1 5.6e-53 206.8
Cmo14g01778 CST 43 271 Leucine-rich Repeat extension Gene Families AT1G62440 65.1 5.5e-48 190.3
Cmo08g00870 . 36 260 Leucine-rich Repeat extension Gene Families AT1G62440 57.5 4.8e-44 177.2
Cmo12g01271 CCT 93 444 Leucine-rich Repeat extension Gene Families AT1G62440 61.9 5.3e-43 173.7
Cmo11g00596 . 53 225 Leucine-rich Repeat extension Gene Families AT1G62440 67.1 2.9e-41 167.9
Cmo10g00642 CCT 61 230 Leucine-rich Repeat extension Gene Families AT1G62440 68.2 5.5e-40 163.7
Cmo17g00425 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 1.5e-37 155.6
Cmo11g00596 . 26 397 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 5.6e-66 250.0
Cmo12g01271 CCT 38 444 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 2.1e-65 248.1
Cmo10g00642 CCT 14 412 Leucine-rich Repeat extension Gene Families AT4G13340 70.3 1.6e-60 231.9
Cmo14g01778 CST 43 367 Leucine-rich Repeat extension Gene Families AT4G13340 71.2 1.9e-53 208.4
Cmo01g01932 . 17 262 Leucine-rich Repeat extension Gene Families AT4G13340 58.5 3.3e-50 197.6
Cmo08g00870 . 26 260 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 1.1e-48 192.6
Cmo08g00869 . 26 150 Leucine-rich Repeat extension Gene Families AT4G13340 58.4 4.2e-37 154.1
Cmo06g01390 CST 14 367 Leucine-rich Repeat extension Gene Families AT4G13340 59.7 2.1e-36 151.8
Cmo11g00596 . 28 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 1.3e-71 268.1
Cmo12g01271 CCT 68 440 Leucine-rich Repeat extension Gene Families AT3G24480 74.4 1.3e-71 268.1
Cmo10g00642 CCT 27 414 Leucine-rich Repeat extension Gene Families AT3G24480 69.9 9.6e-67 251.9
Cmo01g01932 . 25 262 Leucine-rich Repeat extension Gene Families AT3G24480 60.7 6.0e-53 206.1
Cmo14g01778 CST 43 366 Leucine-rich Repeat extension Gene Families AT3G24480 67.4 3.0e-52 203.8
Cmo08g00870 . 17 260 Leucine-rich Repeat extension Gene Families AT3G24480 57.8 1.6e-50 198.0
Cmo17g00425 . 30 225 Leucine-rich Repeat extension Gene Families AT3G24480 64.0 1.4e-41 168.3
Cmo08g00869 . 17 150 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 5.5e-38 156.4
Cmo06g01390 CST 28 367 Leucine-rich Repeat extension Gene Families AT3G24480 58.1 3.9e-36 150.2
Cmo14g01778 CST 15 366 Leucine-rich Repeat extension Gene Families AT3G22800 68.8 2.4e-67 253.8
Cmo06g01390 CST 7 364 Leucine-rich Repeat extension Gene Families AT3G22800 61.6 1.0e-49 195.3
Cmo11g01999 . 56 388 Leucine-rich Repeat extension Gene Families AT3G22800 59.9 1.1e-40 165.2
Cmo11g00596 . 65 393 Leucine-rich Repeat extension Gene Families AT3G22800 61.9 5.2e-38 156.4
Cmo01g01932 . 63 291 Leucine-rich Repeat extension Gene Families AT3G22800 53.9 2.0e-37 154.5
Cmo12g01271 CCT 79 438 Leucine-rich Repeat extension Gene Families AT5G25550 62.7 3.3e-39 160.2
Cmo10g00642 CCT 47 227 Leucine-rich Repeat extension Gene Families AT5G25550 71.8 1.7e-38 157.9
Cmo11g00596 . 39 219 Leucine-rich Repeat extension Gene Families AT5G25550 71.3 2.2e-38 157.5
Cmo06g01390 CST 27 360 Leucine-rich Repeat extension Gene Families AT5G25550 65.6 1.8e-37 154.5
Cmo01g01932 . 31 291 Leucine-rich Repeat extension Gene Families AT5G25550 53.6 7.0e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00870 Cmo_Chr08 FPKM 8.26718 8.773282 6.970807 5.642841 38.677784 42.395321 41.302498 0.281042 0.461888 0.20094