Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00870 ATGGCTTCTCTTCTTCTCTTTCTCCTCCTTGTGGTCTTCACTCTCCCATCGGCCTCCCTCGCCGTCACGAAAGCTGAAGTTTCGTATCTCATTGGTCGTCAACTTTTGGCTCTAAGAGAACACGATGATCTCCCAGATAACTATAAATATGATGCTGAAATTGATCCCCATGAAACTTTCATAAATGAGAGGTTGAAGAAGGCTTTTGTTGCCCTCAAAGCTTGGAAATCCGCCATATATTCTGACCCATATAACTTCACTGAAAATTGGGTTGGCAATGATGTCTGTCTTTATAGGGGCGTTTTTTGTACTACGGCGCTTGATGACTCCACCGTTGAGGTTGTGGCTGGCATTGATTTGAACCATGCCGACATTGCAGGCTACTTGCCACCCGAGCTTGGACTCTTGACAGATTTGGCATTATTCCATATCAACTCTAATAGGTTTTGTGGGATAATTCCTCGTAGCTTTTCTAAGCTCACTCTCATGTTTGAGTTCGATGTCAGTAACAACCGGTTCGTTGGCCATTTTCCAGAGGTTGTCTTTCATTGGCGTATCGCTAAGTTCCTCGATCTTAGGTTCAACGACTTTGAAGGAGAAGTCCCACCGGCACTCTTCACTATGACCTTCGACGCCATATTCTTAAACAACAATAGATTTAGTTCCTTCATCCCGGATACCATTGGAAACTCCACTGTATCCCTTGTGTCCTTTGCGTACAACTACTTCCATGGCTGCATTCCTAGTTCGGTCGGCCAAATGAGCAGCCTCAACCAGGTTCTCTTTATCGGCAACAAACTCCATGGCTGTCTTCCAGTCGAGATCGGAAAGCTTGTCAATCTAACGGTGCTTGATATCAGCAATAATAGCTTTCCTGGCTGGTTGCCTGCGTTATCGGGGCTCAAGAATTTGCAGTATTTGGACGTTAGTTACAATGAATTTAGAGGCTCTGTTTCTGGGGAGATATGCAAATTGCCCCATTTGGGAAACTTTAATTTCTCCTTTAATTATTTTGATAAGCAAGATGCAGAGTGTGTGGCACCTAAAGATTCAAAAAAGGTTTTTGATGATGTCCATAATTGCTTACTTAATCGCCCGGAGCAAAGAGATGCTGAGACTTGTAGCTCTTTTATGATGAAATCGGTGGAGTGTAGAAATTGTGGTGAAGATCCTACTACAAGGTCTCCGGTGGTGGTTCGTACACCGCTACCAACTCCAGAATCTCATCATCCAGTTCCATCCTCACCTCATCATCATCACACAGGCCGAGACTCAGGCGGGCGCACCCCCTGCTCCCCAGGTCGAGACTCAGGCGGGCGCACCCCCTGCTCCCCAGGTCGAGACTCAGGCGGGCGCACCCCCTGCACCCCAGGTCGAGACTCAGGCGAGCGCACCCTCTGCCTCCCAAGTTGA 1413 47.13 MASLLLFLLLVVFTLPSASLAVTKAEVSYLIGRQLLALREHDDLPDNYKYDAEIDPHETFINERLKKAFVALKAWKSAIYSDPYNFTENWVGNDVCLYRGVFCTTALDDSTVEVVAGIDLNHADIAGYLPPELGLLTDLALFHINSNRFCGIIPRSFSKLTLMFEFDVSNNRFVGHFPEVVFHWRIAKFLDLRFNDFEGEVPPALFTMTFDAIFLNNNRFSSFIPDTIGNSTVSLVSFAYNYFHGCIPSSVGQMSSLNQVLFIGNKLHGCLPVEIGKLVNLTVLDISNNSFPGWLPALSGLKNLQYLDVSYNEFRGSVSGEICKLPHLGNFNFSFNYFDKQDAECVAPKDSKKVFDDVHNCLLNRPEQRDAETCSSFMMKSVECRNCGEDPTTRSPVVVRTPLPTPESHHPVPSSPHHHHTGRDSGGRTPCSPGRDSGGRTPCSPGRDSGGRTPCTPGRDSGERTLCLPS 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5621196 5622985 - CmoCh08G008700.1 Cmo08g00870 387603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00870 470 Gene3D Ribonuclease Inhibitor 68 358 IPR032675 -
Cmo08g00870 470 SUPERFAMILY L domain-like 70 363 - -
Cmo08g00870 470 MobiDBLite consensus disorder prediction 389 470 - -
Cmo08g00870 470 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 5 420 - -
Cmo08g00870 470 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 5 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00870 Cmo-Chr8:5621196 Cmo17g00425 Cmo-Chr17:2835184 5.34E-177 dispersed
Cmo08g00869 Cmo-Chr8:5609995 Cmo08g00870 Cmo-Chr8:5621196 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00870 - - cmos:111464211 845.114