Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00877 ATGAATTCGCGGGAAGATGTAATTACTGCGGTGCTTTTGGGTTTGTTGCTGACTTTGAGGCTGGTTTCTGCTGGGGATATAGTTCATCAGGACACTGTCGCACCCGCGCGCCCTGGTTGTGAGAATAATTTCGTTCTGGTGAAAGTCCCTACTTGGGTTAATGGTGCAGCGGCCATTGAATATGTTGGTGTTGGTGCTCGATTTGGCCCGACCTTGGAATCAAAGGAAAAACATGCTACTCATACTAGAGTTGCTCTGGCAGATCCTCCTGATTGTTGTAGTAGGCCTAAGAATAAGCTGACTGGGGAGGTGATCTTGGTACGACGTGGAAACTGTAGTTTCACAAAGAAGGCAAATATTGCAGAAAATGCTAATGCTTCAGCCATCCTCATCATTAATAACAGTAAAGAACTTTTCAAGATGGTCTGTGAGGAGAATGAAACTGATGTAACCATAGGCATACCTGCTGTCATGCTCCCTCAAGATGCTGGTGATAGTATTGAGAGAAATTTGAAGAACCACATCTCAGTATCTGTGCAACTTTATTCCCCACTTCGACCAGTAGTAGACGTCGCTGAAGTATTTTTGTGGCTTATGGCTGTTGGTACTGTCTTAGTGGCTTCTTATTGGTCTGCATGGACTGCACGAGAAGCAGCTATCGAGCATGATAAGCTGTTGAAGGATGGTTCAGATGAGTTGCTGCAGACGGAAGCCACTGGTTCCAGTGGTTACATAGATATTAACACTACAGCTGCAATTCTCTTTGTCGTGATCGCTTCATGTTTCTTGGTTATGCTCTACAAATTAATGTCTTCCTGGTTTCTTGAAGTTCTCGTGGTTCTATTTTGCATCGGCGGTGCAGAGGGACTGCAAACTTGCTTGGTGGCTTTGTTGTCATGTTTCAGATGGTTTGAACATGCTGCTGAGTCATATATCAAAGTACCCTTCTTTGGAGCCATGTCCCATCTGACGTTGGCAGTTTTTCCTTTCTGCTTAGCGTTTGCTGTTCTTTGGGCTTACTATCACAAAATATCTTTTGCTTGGATAGGCCAAGACATCCTTGGTATTGCACTCATAGTTACCGTTCTCCAGATTGTTCGAGTTCCTAATCTCAAGGTTGGGACGGTTCTCCTCAGCTGTGCCTTTTTGTACGACATTTTTTGGGTATTCGTCTCGAAATGGTGGTTCCACGAGAGCGTTATGATAGTGGTTGCTCGTGGTGATAAGAGTGGAGAAGTTGGTATACCCATGCTGCTTAAGATTCCACGGATGTTCGATCCTTGGGGAGGGTACAGCATTATCGGATTTGGTGATATTATCTTGCCTGGACTTGTAGTCGCATTTTCACTAAGATATGATTGGCTTGCGAAGAAGAAACTCCGAGCAGGTTACTTTGTTTGGGCAATGACTGCTTATGGCACAGGCCTACTCATCACTTACGTAGCTTTGAATTTAATGGACGGACATGGCCAACCAGCTTTGCTTTACATAGTTCCGTTCACCCTTGGCACATTTTTGACCCTGGGAAAGCAAAGAGGGGATCTTAAGATACTATGGACAAGAGGAGAACCAGAAAGGCCTTGCCCACACATCCAATTCCAACCCTCCTTTCAACATTAA 1620 44.69 MNSREDVITAVLLGLLLTLRLVSAGDIVHQDTVAPARPGCENNFVLVKVPTWVNGAAAIEYVGVGARFGPTLESKEKHATHTRVALADPPDCCSRPKNKLTGEVILVRRGNCSFTKKANIAENANASAILIINNSKELFKMVCEENETDVTIGIPAVMLPQDAGDSIERNLKNHISVSVQLYSPLRPVVDVAEVFLWLMAVGTVLVASYWSAWTAREAAIEHDKLLKDGSDELLQTEATGSSGYIDINTTAAILFVVIASCFLVMLYKLMSSWFLEVLVVLFCIGGAEGLQTCLVALLSCFRWFEHAAESYIKVPFFGAMSHLTLAVFPFCLAFAVLWAYYHKISFAWIGQDILGIALIVTVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDKSGEVGIPMLLKIPRMFDPWGGYSIIGFGDIILPGLVVAFSLRYDWLAKKKLRAGYFVWAMTAYGTGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKQRGDLKILWTRGEPERPCPHIQFQPSFQH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5663352 5673604 - CmoCh08G008770.1 Cmo08g00877 387610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00877 539 Pfam PA domain 89 167 IPR003137 -
Cmo08g00877 539 SUPERFAMILY PA domain 97 177 IPR046450 -
Cmo08g00877 539 Pfam Signal peptide peptidase 245 523 IPR007369 GO:0004190|GO:0016021
Cmo08g00877 539 PANTHER PA DOMAIN, PRESENILIN/SIGNAL PEPTIDE PEPTIDASE-RELATED 8 533 - -
Cmo08g00877 539 SMART psh_8 243 512 IPR006639 GO:0004190|GO:0016021
Cmo08g00877 539 PANTHER SIGNAL PEPTIDE PEPTIDASE 8 533 IPR007369 GO:0004190|GO:0016021
Cmo08g00877 539 Gene3D - 40 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00877 K09597 SPPL2B; signal peptide peptidase-like 2B [EC:3.4.23.-] - csv:101221987 988.023
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00877 Cmo17g00554 CST
Cmo08g00877 Cmo17g00413 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01479 Cmo-Chr2:8662590 Cmo08g00877 Cmo-Chr8:5663352 0 dispersed
Cmo08g00877 Cmo-Chr8:5663352 Cmo17g00554 Cmo-Chr17:5643411 8.20E-142 dispersed
Cmo15g01297 Cmo-Chr15:8901972 Cmo08g00877 Cmo-Chr8:5663352 0 wgd
Cmo16g00127 Cmo-Chr16:572977 Cmo08g00877 Cmo-Chr8:5663352 9.38E-28 wgd
Cmo17g00413 Cmo-Chr17:2749741 Cmo08g00877 Cmo-Chr8:5663352 0 wgd
Cmo18g01275 Cmo-Chr18:12384021 Cmo08g00877 Cmo-Chr8:5663352 7.35E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1100 . . . . . . . . Cmo08g00877 Cmo17g00554 . . . . . . . . . . . . . . Cla08g00393 Cam08g0814 Cec08g0389 Cco08g0484 Clacu08g0523 . Cre08g0354 . . . Cone11ag0637 . . . . Blo02g00439 Blo07g00107 . Bda13g00263 . Bpe13g00727 Bma02g00979 Bma06g01433 . . . Cma08g00905 Cma17g00570 . Car17g00525 Cpe12g00484 . . . . . . . . . . . . . . . Lsi09g01570 . . Cme11g02164
Vvi15g856 . . . . Bpe14g00986 . . . Cmo08g00877 Cmo17g00413 . . . . . . . . . . . . . . . . . . . . . Cone14ag0361 Cone15ag0399 . . . Csa06g00059 Chy11g01645 . Blo02g00361 Blo16g00582 . Bda13g00343 . . Bma02g01054 . Sed05g0772 . . Cma08g00905 Cma17g00435 Car08g00785 Car17g00400 Cpe17g00362 Cpe12g00372 Bhi12g01860 Tan06g2030 Cmetu09g0211 Lac12g1720 Hepe03g0559 . Lcy13g0697 Cla06g00343 Cam06g0372 Cec06g0379 Cco06g0372 Clacu06g0364 Cmu06g0362 Cre06g1133 Lsi09g01570 . . Cme11g02164
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002068 3 3 2 4 2 1 4 1 1 2 1 1 2 2 2 3 1 4 4 1 2 2 2 1 3 2 2 2 3 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00877 Cmo_Chr08 FPKM 15.356946 16.000549 18.591925 18.420565 20.868706 21.901825 22.395971 18.447111 18.219614 20.047016