Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00884 | ATGGATCGAAGAGATCCAATGGCGTTATCGGGGTCGCAATCGTTCTATATTCAGAGGGGAATGAGCAATTCTGGCTCTGGAGCACAGGGCATGCGTTCCTCTACTAACCCAAATATGTCTTTTCAGACCAACGCTGGAGGCAACAATGTTGGATCAGGCTTGCCAATGGACCCTAACCCTGCTATTTCACCTTATGGTGCCAATGTAGGAGCTCAATCTGGTGGAATGGTTGCGAGTGAACCGGTGAAACGGAAGCGAGGTCGGCCTCGCAAATATGGAACTGAAGGAACTGTGTCTTTGGCACTGTCCCCCTCTCCATCTGCCCCTAATCCAGCCAGTGTTGGCTCCTCGCCGAAGCGGGGTAGGGGACGGCCTCCCGGGTCGGGAAAGAAGCAACAGTTAGCTTCTCTTGGTGAACCACTCTCTGGTTCAGCTGGCATGGGTTTTACTCCACATGTTATAACCATTGGAGTAGGAGAAGATGTCGCTGCCAAAATTATGTCGTTTTCACAACAGGGACCAAGAATTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTGACTCTTCGTCAACCTTCGACTTCAGGAGGCACAGTCACGTACGAGGGTCGTTTTGAGATAATATGTCTGTCGGGCTCGTACTCGCTTGGGGATATATCTGGTTCGAGGAACCGCACTGGTGGTCTGAGTGTCTCCCTTGCGAGCCCTGATGGTCGTGTTATCGGTGGTGGTGTAGGAGGAGCACTTATCGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGAAGTTCAAAGTCGAAGTACAAGAAAAGGGAAGCTGTGGAAGGTGTGATAGACTCGGATCATCAGGCGGTAGATCACGCAGTGGCGATCGCAAACGTGCAGCAGAATCAGAATCAGAATCAGAATATGACTCCGACCTCCCCAGTTAGTATGTGGCCGTCGTCGCAGTCCCTGGACATGCGCAACGCACACATGGACATCGATCTGATGCGCGGGTGA | 1017 | 52.02 | MDRRDPMALSGSQSFYIQRGMSNSGSGAQGMRSSTNPNMSFQTNAGGNNVGSGLPMDPNPAISPYGANVGAQSGGMVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAPNPASVGSSPKRGRGRPPGSGKKQQLASLGEPLSGSAGMGFTPHVITIGVGEDVAAKIMSFSQQGPRIVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYSLGDISGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAVEGVIDSDHQAVDHAVAIANVQQNQNQNQNMTPTSPVSMWPSSQSLDMRNAHMDIDLMRG | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5731032 | 5735200 | + | CmoCh08G008840.1 | Cmo08g00884 | 387617 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00884 | 338 | MobiDBLite | consensus disorder prediction | 11 | 50 | - | - | |
Cmo08g00884 | 338 | SMART | AT_hook_2 | 119 | 131 | IPR017956 | GO:0003677 | |
Cmo08g00884 | 338 | SMART | AT_hook_2 | 83 | 95 | IPR017956 | GO:0003677 | |
Cmo08g00884 | 338 | Gene3D | - | 151 | 283 | - | - | |
Cmo08g00884 | 338 | MobiDBLite | consensus disorder prediction | 1 | 143 | - | - | |
Cmo08g00884 | 338 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 27 | 313 | IPR039605 | GO:0003680 | |
Cmo08g00884 | 338 | MobiDBLite | consensus disorder prediction | 98 | 114 | - | - | |
Cmo08g00884 | 338 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 151 | 264 | IPR005175 | - | |
Cmo08g00884 | 338 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 27 | 313 | - | - | |
Cmo08g00884 | 338 | CDD | DUF296 | 150 | 264 | IPR005175 | - | |
Cmo08g00884 | 338 | PRINTS | AT-hook-like domain signature | 83 | 93 | IPR017956 | GO:0003677 | |
Cmo08g00884 | 338 | PRINTS | AT-hook-like domain signature | 117 | 128 | IPR017956 | GO:0003677 | |
Cmo08g00884 | 338 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 149 | 274 | - | - | |
Cmo08g00884 | 338 | ProSiteProfiles | PPC domain profile profile. | 145 | 286 | IPR005175 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g00884 | Cmo17g00404 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01494 | Cmo-Chr2:8744133 | Cmo08g00884 | Cmo-Chr8:5731032 | 6.46E-85 | dispersed | |
Cmo08g00884 | Cmo-Chr8:5731032 | Cmo02g01551 | Cmo-Chr2:8983157 | 1.33E-66 | dispersed | |
Cmo15g01287 | Cmo-Chr15:8807628 | Cmo08g00884 | Cmo-Chr8:5731032 | 9.11E-76 | wgd | |
Cmo17g00404 | Cmo-Chr17:2679899 | Cmo08g00884 | Cmo-Chr8:5731032 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00884 | - | - | csv:101203138 | 550.436 |