Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00884 ATGGATCGAAGAGATCCAATGGCGTTATCGGGGTCGCAATCGTTCTATATTCAGAGGGGAATGAGCAATTCTGGCTCTGGAGCACAGGGCATGCGTTCCTCTACTAACCCAAATATGTCTTTTCAGACCAACGCTGGAGGCAACAATGTTGGATCAGGCTTGCCAATGGACCCTAACCCTGCTATTTCACCTTATGGTGCCAATGTAGGAGCTCAATCTGGTGGAATGGTTGCGAGTGAACCGGTGAAACGGAAGCGAGGTCGGCCTCGCAAATATGGAACTGAAGGAACTGTGTCTTTGGCACTGTCCCCCTCTCCATCTGCCCCTAATCCAGCCAGTGTTGGCTCCTCGCCGAAGCGGGGTAGGGGACGGCCTCCCGGGTCGGGAAAGAAGCAACAGTTAGCTTCTCTTGGTGAACCACTCTCTGGTTCAGCTGGCATGGGTTTTACTCCACATGTTATAACCATTGGAGTAGGAGAAGATGTCGCTGCCAAAATTATGTCGTTTTCACAACAGGGACCAAGAATTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTGACTCTTCGTCAACCTTCGACTTCAGGAGGCACAGTCACGTACGAGGGTCGTTTTGAGATAATATGTCTGTCGGGCTCGTACTCGCTTGGGGATATATCTGGTTCGAGGAACCGCACTGGTGGTCTGAGTGTCTCCCTTGCGAGCCCTGATGGTCGTGTTATCGGTGGTGGTGTAGGAGGAGCACTTATCGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGAAGTTCAAAGTCGAAGTACAAGAAAAGGGAAGCTGTGGAAGGTGTGATAGACTCGGATCATCAGGCGGTAGATCACGCAGTGGCGATCGCAAACGTGCAGCAGAATCAGAATCAGAATCAGAATATGACTCCGACCTCCCCAGTTAGTATGTGGCCGTCGTCGCAGTCCCTGGACATGCGCAACGCACACATGGACATCGATCTGATGCGCGGGTGA 1017 52.02 MDRRDPMALSGSQSFYIQRGMSNSGSGAQGMRSSTNPNMSFQTNAGGNNVGSGLPMDPNPAISPYGANVGAQSGGMVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAPNPASVGSSPKRGRGRPPGSGKKQQLASLGEPLSGSAGMGFTPHVITIGVGEDVAAKIMSFSQQGPRIVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYSLGDISGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAVEGVIDSDHQAVDHAVAIANVQQNQNQNQNMTPTSPVSMWPSSQSLDMRNAHMDIDLMRG 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5731032 5735200 + CmoCh08G008840.1 Cmo08g00884 387617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00884 338 MobiDBLite consensus disorder prediction 11 50 - -
Cmo08g00884 338 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Cmo08g00884 338 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Cmo08g00884 338 Gene3D - 151 283 - -
Cmo08g00884 338 MobiDBLite consensus disorder prediction 1 143 - -
Cmo08g00884 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 313 IPR039605 GO:0003680
Cmo08g00884 338 MobiDBLite consensus disorder prediction 98 114 - -
Cmo08g00884 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Cmo08g00884 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 313 - -
Cmo08g00884 338 CDD DUF296 150 264 IPR005175 -
Cmo08g00884 338 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Cmo08g00884 338 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677
Cmo08g00884 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
Cmo08g00884 338 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00884 Cmo17g00404 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01494 Cmo-Chr2:8744133 Cmo08g00884 Cmo-Chr8:5731032 6.46E-85 dispersed
Cmo08g00884 Cmo-Chr8:5731032 Cmo02g01551 Cmo-Chr2:8983157 1.33E-66 dispersed
Cmo15g01287 Cmo-Chr15:8807628 Cmo08g00884 Cmo-Chr8:5731032 9.11E-76 wgd
Cmo17g00404 Cmo-Chr17:2679899 Cmo08g00884 Cmo-Chr8:5731032 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00884 - - csv:101203138 550.436