Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00893 ATGAGTTTTGGGGGTTTTCTTGACGGCGGCGGTGGAGGAAGCGGTGGTGCTCGAATCGTAGCCGATTTATCTTACGTCAACAACAACACCACTGCTTCCAATAATAACCCCACCGGCGGTATCCCTGGTGGTGGAATTATGCCATCTGGTGCAGTCGCTCCGCCGCGCCTTATAACTCAATCTCTCACCAAGTCGATGTTTAACTCTCCTGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAAGGGGATTTGGCTGCCCGACTACCCGAGGGTTTCGAGCACAATGTTGGGAGAAGAGGCAGAGATGAAGAGCACGAGAGTAGATCTGGAAGTGACAACATGGACGGCGGCTCCGGCGACGACCAAGACGCCGCCGACAATCCTCCGAGGAAGAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAATCTGTTTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTGGAGTTGAGTCGGAGGCTGTGCTTAGAAACCAGACAAGTTAAGTTTTGGTTCCAAAATCGTCGGACCCAGATGAAGACCCAATTGGAACGCCATGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAATCCGATCTGTTCAAACTGTGGTGGTCCAGCGATTATCGGAGAGATTTCTCTGGAAGAGCAGCAGTTAAGGATCGAGAATGCTCGTTTGAAGGATGAGTTGGACCGGGTTTGCACGCTAGCTGGGAAATTCCTTGGAAGACCGATTTCGTCCTTGGCTAACTCCATTGCACCTCCATTGCCAAGCTCGAGTTTGGAACTGGGAGTTGGGAGTAATGGATTTGGGAGTTTGACCATGGCGACGTCGATGCCTATTGGACCGGACTTTGGAGGCGGGTTGTCCGGTAATCTGTCTGTTGTTCAGCCACCTGTGAGGTCAACACCAGGGATGGGACTCGATCGGTCGGTGGAGCGATCTATGCTACTCGAGCTTGCTTTGGCTGCCATGGATGAATTAGTTAAAATGGCTCAGACTGATGAGCCTCTTTGGATTGGGAGCTTGGAAGGTGGAAGAGAAATACTGAACCAGGAAGAATACATGAGGACATTCACTCCTTGCATCGGCATGAAACCTAACGGTTTCGTTACCGAGGCCTCGAGAGAAACTGGCATGGTGATTATCAACAGCCTTGCGCTCGTCGAGACATTGATGGACGCGAATCGATGGGCAGAGATGTTTCCATGTATGATTGCTCGAACGACAACCACCGATGTGATCTCCAGTGGCATGGGCGGAACAAGGAATGGTGCACTTCAACTGATGCATGCCGAGCTTCAAGTCCTCTCACCGTTAGTACCCGTCCGGGAAGTCAATTTTCTACGGTTCTGCAAGCAGCACGCCGAAGGGGTTTGGGCTGTCGTCGACCTATCGGTGGACGCCATGCGAGAGACTCCAACCAGTGGTTCCTCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTCGTACAAGACATGCCCAATGGATATTCCAAGGTTACGTGGGTGGAACATGCAGAGTACGATGATAGCCAAGTTCATCAGCTATACCGACCGCTTCTCAGCTCTGGTATGGGATTTGGAGCGCAACGGTGGGTTGCTACCCTTCAACGACAATGCGAGTGTCTTGCTATCCTCATGTCGTCTGCTGTACCTGTTCGAGATCACACTGCGATAACTGCAGGTGGGCGACGTAGTATGCTGAAGCTAGCACAACGAATGACAGCCAACTTCTGTGCGGGTGTGTGTGCATCGACGGTGCATAAATGGAACAAGCTGAATGCTGGTAGTGTGGATGAGGACGTTCGTGTCATGACACGAAAGAGCGTCGACGATCCTGGTGAACCACCAGGCATTGTGTTGAGTGCTGCTACGTCGGTTTGGCTACCGTTATCACCACAACGACTCTTCGACTTTCTCCGGGACGAACGGTTGAGAAGCGAATGGGACATCCTATCCAATGGCGGCCCCATGCAGGAGATGGCCCATATAGCCAAAGGGCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACTTGCATAGATGCGGCTGGGTCCCTTGTGGTGTACGCGCCGGTGGATATTCCGGCTATGCACGTCGTGATGAACGGCGGCGATTCGGCGTATGTGGCGCTTCTGCCATCTGGGTTTGCTATAGTACCTGACGGGGCGGTGAGTCGAGGGCTGACAACGACGAACGGCAGCAGTCCAAGTGGCGGGGATGGGCCACAGAGTCAGAGAGTGACAGGCGGTGGTGGGTCCCTCCTGACCGTCGCGTTTCAAATACTCGTGAATAGCCTTCCTACAGCCAAGCTCACCGTGGAATCCGTTGAAACGGTCAATAATCTCATCTCTTGCACCGTTCAAAAGATCAAGGCCGCTCTTCAATGTGAAACCTGA 2520 52.22 MSFGGFLDGGGGGSGGARIVADLSYVNNNTTASNNNPTGGIPGGGIMPSGAVAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGRDEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELESVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCTLAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLSVVQPPVRSTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDANRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDLSVDAMRETPTSGSSFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPVRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPLSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVSRGLTTTNGSSPSGGDGPQSQRVTGGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5801325 5806228 + CmoCh08G008930.1 Cmo08g00893 387626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00893 839 SUPERFAMILY Bet v1-like 594 832 - -
Cmo08g00893 839 SUPERFAMILY Homeodomain-like 115 190 IPR009057 -
Cmo08g00893 839 CDD START_ArGLABRA2_like 336 565 - -
Cmo08g00893 839 Coils Coil 231 251 - -
Cmo08g00893 839 Pfam START domain 341 566 IPR002913 GO:0008289
Cmo08g00893 839 Gene3D - 120 206 - -
Cmo08g00893 839 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Cmo08g00893 839 MobiDBLite consensus disorder prediction 93 140 - -
Cmo08g00893 839 ProSiteProfiles START domain profile. 332 569 IPR002913 GO:0008289
Cmo08g00893 839 Pfam Homeodomain 133 188 IPR001356 GO:0003677
Cmo08g00893 839 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Cmo08g00893 839 SMART START_1 341 566 IPR002913 GO:0008289
Cmo08g00893 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 78 837 IPR042160 -
Cmo08g00893 839 SUPERFAMILY Bet v1-like 334 566 - -
Cmo08g00893 839 MobiDBLite consensus disorder prediction 94 113 - -
Cmo08g00893 839 Coils Coil 184 216 - -
Cmo08g00893 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 78 837 - -
Cmo08g00893 839 CDD homeodomain 132 190 IPR001356 GO:0003677
Cmo08g00893 839 SMART HOX_1 131 194 IPR001356 GO:0003677
Cmo08g00893 839 MobiDBLite consensus disorder prediction 768 788 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00112 Cmo-Chr1:496938 Cmo08g00893 Cmo-Chr8:5801325 0 dispersed
Cmo07g00291 Cmo-Chr7:1422577 Cmo08g00893 Cmo-Chr8:5801325 0 dispersed
Cmo08g00673 Cmo-Chr8:4319205 Cmo08g00893 Cmo-Chr8:5801325 2.72E-168 dispersed
Cmo08g00893 Cmo-Chr8:5801325 Cmo19g00954 Cmo-Chr19:8710347 0 dispersed
Cmo13g01146 Cmo-Chr13:9265340 Cmo08g00893 Cmo-Chr8:5801325 0 dispersed
Cmo14g00882 Cmo-Chr14:4675827 Cmo08g00893 Cmo-Chr8:5801325 0 dispersed
Cmo14g01339 Cmo-Chr14:11154592 Cmo08g00893 Cmo-Chr8:5801325 1.88E-147 dispersed
Cmo14g02074 Cmo-Chr14:15106336 Cmo08g00893 Cmo-Chr8:5801325 0 wgd
Cmo16g00146 Cmo-Chr16:664145 Cmo08g00893 Cmo-Chr8:5801325 0 wgd
Cmo17g00020 Cmo-Chr17:89213 Cmo08g00893 Cmo-Chr8:5801325 0 wgd
Cmo18g01257 Cmo-Chr18:12311482 Cmo08g00893 Cmo-Chr8:5801325 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10273 PF01852 START 2.30E-58 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00893 K09338 - csv:101222248 1530.77