Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00909 ATGGACAACTACGGTTCTTCGCCATCGTATCCGTACCACAATCCATATGCATACCCTTGTTCGGCTCCCCGTCAATACCCACCTGCTTCTCAATATCCACCTTCTCAATATCTACATCCTCATTATGCACATCCAAGTTTCGATCCATATGGTCGTCCTCTTTACCCTTACCCCTATAGTCCTTCACATGTCGCTCCGTATGCGTATCCCCCACACCCATCCCATTCTGGGTTAATAGAGTATATTCAACATCCACCTTCGTATTCTGGTCTTGTATCTTACCCTTATCCTTACCCTGATGCCTCATCGCCTAATAGTGGTGCTAGGCCATCCATTCATTATCATAGCAATTTCCAACATGGTACATCCCCATATCGGTATCAAGAATCTATCGCATACCCTTCACCAGAAACTCAATACCGACCACCCCCTTCACGAGTAAATAGCTTCTCTAGTCACTACAGGATTGATAACACTGATTCAGGCTCTTCTGCTCACCTGCCTATTGATGACCTTTTGTGCAATGTACATTTGTCTGATCATCAACCAAATGCTCCTGCTTCACCTCCTGCACCTGCTGCTGCACCTGTACCTGCACAACCTTCAGCTTCTTTATTGGCGAATTCTCCTCAAAGCATGAGATATGATCGGCGCGATCGATTTTATGGCTTTCCCAATTCATCCTTTTCTAGTTTCGATGTGGGGAATTCCGATCAATTGACTGCATCCAAGCAACCTTTGTTTTCCCATTCAAGCTCATTTGGTGGGTCTCAACATAATCAGAACTTGCAGATTGTTCCGTTGCACAGTAAAGCATCATTGAAAGTCTTGCTGTTGCATGGAAACTTAGAAATATGGATTAATGAGGCCAGAAATCTTCCAAATATGGACATGTTTCACAAAACCTTGGGGGATATGTTTGCTAAATTACCTGGCAAAATTGAAGGACGCGTGAGTCATAAGATCACTAGTGATCCTTATGTATCGATATCTGTAGCAAATGCAATAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAACCCTGTATGGAGGCAACATTTCTATGTTCCCGTTGCACATTATGTTGCTGAAGTACTTTTTTTCGTTAAAGACAGTGATGTTGTTGGTTCACAGCTAATAGGAACTGTAGCAATTCCTGCAGAACAAATATATTCAGGGTCTATAGTTGAGGGAACCTTCCCAATCCTAAATAATGGGAAGCCATGTAAACCTGGAGCTGCACTGAACTTTTCTATTCAATATACCCCAATGGAGAGGCTCAGTACTTATCATCATGGAGTGGGAGCTGGTCCTGATTATCAGGGAGTTCCTGATACATATTTCCCCCTCAGAAAGGGTGGAGCTGTTACTCTTTATCAAGATGCTCATGTTCCAGACGGTCACCTTCCAAATTTGATGCTTGATAATGGTATGTACTATGTACATGGGAAATGTTGGCATGACATCTTTGATTCCGTACGTCAGGCTCGCAGGTTAATTTACATAACGGGGTGGTCAGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGGGACAGAGTGTACCCTTGGAGATCTCCTGAGGTCCAAGTCCCAGGAGGGAGTGAGAGTTCTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGTTACAAAACTGATGGTTTCATGCAAACCCATGATGAAGAAACTCGCAGGTTTTTCAAACACTCCTCCGTTCAAGTGATACTTTGTCCTCGCATGGCTGGAAAACGACATAGTTGGGTTAAGCAAAAGGAAGTTGGAACTATTTATACCCACCATCAGAAAACAGTAATTGTGGATGCTGATGGTGGAAATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGACTTGATTTATGCGACGGCCGGTATGATACTCCATCACATCCCATATTTCGGACACTTCAAACAGTACACAAGGATGATTACCACAATCCTACATACACGGGTAGTGCTGTTGGTTGTCCAAGAGAACCGTGGCATGATCTGCACAGCAAAATTGAGGGTCCAGCAGCATACGATGTTTTGACGAATTTTGAGGAGAGATGGAGGAGGGCTTCAAAACCTCATGGGATAAAGAAGTTGAAATCATATGATGACGCTTTGCTGCGGATTGAAAGAATTCCCGACATAATTGGAATTTCGGAATCTTACTGCACTAATGAAAATGACCCTGAATCATGGCATGTCCAGATTTTTCGCTCAATTGATTCAAGTTCTGTTAAAGATTTCCCAAAGGAACCAAAAGATGCCCCCAGCAAGAACCTTGTATGTGGAAAGAATGTGCTGATTGACATGAGTATACACACAGCATATGTGAAAGCCATCCGAGCTGCCCAACATTACATTTATATAGAGAACCAATATTTTATTGGGTCATCCTTCAATTGGAACTCAAACAAAGATTTAGGTGCCAACAATTTGATCCCAATGGAAATTGCACTAAAGATTGCTGATAAAATCAGAGCAAGTGAGAGGTTTGCTGCATATATTCTCATTCCCATGTGGCCGGAGGGCGTTCCAACTGCTGCTGCCACTCAGAGGATATTATTTTGGCAGCAAAAAACGATGCAAATGATGTATGAAGTCATCTATAAGGCTTTGATGGAGGTTGGTCTTGAGGATGCATTCTCTCCTCAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGCTACGGAGGGAAATGATTCTTTGTGTTCTGAAAGTCCTAATGCAGAAAACACCCCTCAGGCACTTAGTCGGAAAAGCAGAAGGTTTATGGTATACGTTCACTCCAAAGGCATGATAGTTGACGACGAGTTTGTGATTTTGGGATCTGCTAACATCAACCAGAGGTCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCACTATACGTGGGCAAGGAAAGTTTCACGTCCTCGTGGACAGATCTATGGATATCGGATGTCGTTGTGGGCGGAGCATACGGGAACTATGGAAGACTGTTTCAACCAACCAGAGAGCCTGGAATGCGTGAAAAAACTTAGAACAATTGGAGAATCAAGCTGGAAACAATTTGCTGGAGAAGATGTAACAGAGATGAGAGGACATCTTCTGAAGTACCCTGTTGAAGTTGATAGAAGAGGGAGAGTAAGATCTCTTCCTGGACATGAAAACTTCCCAGACGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGCATTCATGAGAACCTCACTATCTAA 3267 42.98 MDNYGSSPSYPYHNPYAYPCSAPRQYPPASQYPPSQYLHPHYAHPSFDPYGRPLYPYPYSPSHVAPYAYPPHPSHSGLIEYIQHPPSYSGLVSYPYPYPDASSPNSGARPSIHYHSNFQHGTSPYRYQESIAYPSPETQYRPPPSRVNSFSSHYRIDNTDSGSSAHLPIDDLLCNVHLSDHQPNAPASPPAPAAAPVPAQPSASLLANSPQSMRYDRRDRFYGFPNSSFSSFDVGNSDQLTASKQPLFSHSSSFGGSQHNQNLQIVPLHSKASLKVLLLHGNLEIWINEARNLPNMDMFHKTLGDMFAKLPGKIEGRVSHKITSDPYVSISVANAIIGRTFVISNNENPVWRQHFYVPVAHYVAEVLFFVKDSDVVGSQLIGTVAIPAEQIYSGSIVEGTFPILNNGKPCKPGAALNFSIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYVHGKCWHDIFDSVRQARRLIYITGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRMAGKRHSWVKQKEVGTIYTHHQKTVIVDADGGNNRRKIIAFVGGLDLCDGRYDTPSHPIFRTLQTVHKDDYHNPTYTGSAVGCPREPWHDLHSKIEGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLRIERIPDIIGISESYCTNENDPESWHVQIFRSIDSSSVKDFPKEPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDLGANNLIPMEIALKIADKIRASERFAAYILIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEDAFSPQDYLNFFCLGNREATEGNDSLCSESPNAENTPQALSRKSRRFMVYVHSKGMIVDDEFVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKVSRPRGQIYGYRMSLWAEHTGTMEDCFNQPESLECVKKLRTIGESSWKQFAGEDVTEMRGHLLKYPVEVDRRGRVRSLPGHENFPDVGGKIVGSFLGIHENLTI 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5910019 5919984 - CmoCh08G009090.1 Cmo08g00909 387642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00909 1088 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 934 961 IPR001736 GO:0003824
Cmo08g00909 1088 ProSiteProfiles C2 domain profile. 259 401 IPR000008 -
Cmo08g00909 1088 SUPERFAMILY Phospholipase D/nuclease 722 1020 - -
Cmo08g00909 1088 Pfam Phospholipase D C terminal 1008 1078 IPR024632 -
Cmo08g00909 1088 PANTHER PHOSPHOLIPASE D ALPHA 1 180 1088 - -
Cmo08g00909 1088 MobiDBLite consensus disorder prediction 142 162 - -
Cmo08g00909 1088 Gene3D C2 domain 276 410 IPR035892 -
Cmo08g00909 1088 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 279 424 IPR035892 -
Cmo08g00909 1088 SUPERFAMILY Phospholipase D/nuclease 442 700 - -
Cmo08g00909 1088 SMART pld_4 934 961 IPR001736 GO:0003824
Cmo08g00909 1088 SMART pld_4 601 636 IPR001736 GO:0003824
Cmo08g00909 1088 MobiDBLite consensus disorder prediction 180 209 - -
Cmo08g00909 1088 Pfam C2 domain 281 403 IPR000008 -
Cmo08g00909 1088 Gene3D Endonuclease Chain A 479 715 - -
Cmo08g00909 1088 Pfam PLD-like domain 934 970 IPR025202 -
Cmo08g00909 1088 MobiDBLite consensus disorder prediction 134 162 - -
Cmo08g00909 1088 Pfam Phospholipase D Active site motif 602 636 IPR001736 GO:0003824
Cmo08g00909 1088 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 601 636 IPR001736 GO:0003824
Cmo08g00909 1088 SMART C2_3c 282 400 IPR000008 -
Cmo08g00909 1088 Gene3D Endonuclease Chain A 745 983 - -
Cmo08g00909 1088 CDD C2_plant_PLD 275 423 - -
Cmo08g00909 1088 PANTHER PHOSPHOLIPASE D 180 1088 IPR015679 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00331 Cmo-Chr5:1463539 Cmo08g00909 Cmo-Chr8:5910019 0 dispersed
Cmo07g00397 Cmo-Chr7:1805774 Cmo08g00909 Cmo-Chr8:5910019 0 dispersed
Cmo06g00749 Cmo-Chr6:3897532 Cmo08g00909 Cmo-Chr8:5910019 0 transposed
Cmo08g00643 Cmo-Chr8:4179383 Cmo08g00909 Cmo-Chr8:5910019 0 transposed
Cmo17g00004 Cmo-Chr17:29457 Cmo08g00909 Cmo-Chr8:5910019 3.49E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00909 K01115 - csv:101218942 1958.34