Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00911 ATGGGGAGAGGAAGAGTTGAACTGAAGCGAATAGAGAACAAAATCAACCGCCAAGTCACTTTCTCCAAGCGCCGTAATGGTCTCCTCAAAAAAGCTTATGAACTCTCTGTTCTTTGCGATGCTGAGGTCGCTCTCATCATCTTCTCCAGCCGCGGCAAGCTCTATGAATTCGGCAGCGCTGGTACGACCAAGACACTGGAGCGATACCAACGTTGTTGCTTCTCTCCCCAAGACAATTACAGCGAACGAGAATCCCAGAACTGGTTCGTGGAAATCTCGAAACTGAAAGCTAAATATGAATCGCTATGTCGCACTCATAGGCACTTGCTTGGGGAAGATCTTGGACCATTGAGTGTTAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAGCAGCTCTTGCTCAAGCTAGACAAAGGAAGACTCAGATGATGACTGAACAGATGGAAGATCTACGCAGAAAGGAACGACAACTCGGAGATCTGAATCGAGAGCTGAAGCTCAAGCTCGAGACAGAGGGACAAAATCTTAAAGCCATCCAAAGTTTTTGGAGCTCAAGTTCATCAGCTGCTGAACATGGCAACACCTTCCCGTTGTATCCTTCACAAGCTAGCACCATTGAGTATCAACACGAACCTATCTTACAAATCGGGTATCTCTAA 660 46.21 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTKTLERYQRCCFSPQDNYSERESQNWFVEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQMMTEQMEDLRRKERQLGDLNRELKLKLETEGQNLKAIQSFWSSSSSAAEHGNTFPLYPSQASTIEYQHEPILQIGYL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5934466 5936248 + CmoCh08G009110.1 Cmo08g00911 387644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00911 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo08g00911 219 Coils Coil 119 171 - -
Cmo08g00911 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo08g00911 219 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Cmo08g00911 219 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo08g00911 219 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo08g00911 219 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Cmo08g00911 219 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 218 - -
Cmo08g00911 219 PANTHER MADS BOX PROTEIN 1 218 - -
Cmo08g00911 219 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Cmo08g00911 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo08g00911 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo08g00911 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo08g00911 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo08g00911 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00911 Cmo-Chr8:5934466 Cmo17g01377 Cmo-Chr17:10695432 1.88E-73 dispersed
Cmo13g00843 Cmo-Chr13:7796051 Cmo08g00911 Cmo-Chr8:5934466 3.00E-47 dispersed
Cmo14g02060 Cmo-Chr14:15036993 Cmo08g00911 Cmo-Chr8:5934466 1.05E-47 dispersed
Cmo18g00224 Cmo-Chr18:1462698 Cmo08g00911 Cmo-Chr8:5934466 1.18E-43 dispersed
Cmo08g00911 Cmo-Chr8:5934466 Cmo08g00912 Cmo-Chr8:5937954 5.36E-46 tandem
Cmo01g00251 Cmo-Chr1:1127476 Cmo08g00911 Cmo-Chr8:5934466 6.36E-42 transposed
Cmo16g00165 Cmo-Chr16:750132 Cmo08g00911 Cmo-Chr8:5934466 1.30E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10276 PF01486 K-box 2.20E-28 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00911 K09264 - csv:101219421 332.028