Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00911 | ATGGGGAGAGGAAGAGTTGAACTGAAGCGAATAGAGAACAAAATCAACCGCCAAGTCACTTTCTCCAAGCGCCGTAATGGTCTCCTCAAAAAAGCTTATGAACTCTCTGTTCTTTGCGATGCTGAGGTCGCTCTCATCATCTTCTCCAGCCGCGGCAAGCTCTATGAATTCGGCAGCGCTGGTACGACCAAGACACTGGAGCGATACCAACGTTGTTGCTTCTCTCCCCAAGACAATTACAGCGAACGAGAATCCCAGAACTGGTTCGTGGAAATCTCGAAACTGAAAGCTAAATATGAATCGCTATGTCGCACTCATAGGCACTTGCTTGGGGAAGATCTTGGACCATTGAGTGTTAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAGCAGCTCTTGCTCAAGCTAGACAAAGGAAGACTCAGATGATGACTGAACAGATGGAAGATCTACGCAGAAAGGAACGACAACTCGGAGATCTGAATCGAGAGCTGAAGCTCAAGCTCGAGACAGAGGGACAAAATCTTAAAGCCATCCAAAGTTTTTGGAGCTCAAGTTCATCAGCTGCTGAACATGGCAACACCTTCCCGTTGTATCCTTCACAAGCTAGCACCATTGAGTATCAACACGAACCTATCTTACAAATCGGGTATCTCTAA | 660 | 46.21 | MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTKTLERYQRCCFSPQDNYSERESQNWFVEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQMMTEQMEDLRRKERQLGDLNRELKLKLETEGQNLKAIQSFWSSSSSAAEHGNTFPLYPSQASTIEYQHEPILQIGYL | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5934466 | 5936248 | + | CmoCh08G009110.1 | Cmo08g00911 | 387644 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00911 | 219 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo08g00911 | 219 | Coils | Coil | 119 | 171 | - | - | |
Cmo08g00911 | 219 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo08g00911 | 219 | SUPERFAMILY | SRF-like | 2 | 79 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo08g00911 | 219 | Pfam | K-box region | 82 | 169 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo08g00911 | 219 | ProSiteProfiles | K-box domain profile. | 85 | 175 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo08g00911 | 219 | Gene3D | - | 13 | 80 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo08g00911 | 219 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR 17 | 1 | 218 | - | - | |
Cmo08g00911 | 219 | PANTHER | MADS BOX PROTEIN | 1 | 218 | - | - | |
Cmo08g00911 | 219 | CDD | MADS_MEF2_like | 2 | 72 | IPR033896 | GO:0000977|GO:0045944 | |
Cmo08g00911 | 219 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo08g00911 | 219 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo08g00911 | 219 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo08g00911 | 219 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo08g00911 | 219 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00911 | Cmo-Chr8:5934466 | Cmo17g01377 | Cmo-Chr17:10695432 | 1.88E-73 | dispersed | |
Cmo13g00843 | Cmo-Chr13:7796051 | Cmo08g00911 | Cmo-Chr8:5934466 | 3.00E-47 | dispersed | |
Cmo14g02060 | Cmo-Chr14:15036993 | Cmo08g00911 | Cmo-Chr8:5934466 | 1.05E-47 | dispersed | |
Cmo18g00224 | Cmo-Chr18:1462698 | Cmo08g00911 | Cmo-Chr8:5934466 | 1.18E-43 | dispersed | |
Cmo08g00911 | Cmo-Chr8:5934466 | Cmo08g00912 | Cmo-Chr8:5937954 | 5.36E-46 | tandem | |
Cmo01g00251 | Cmo-Chr1:1127476 | Cmo08g00911 | Cmo-Chr8:5934466 | 6.36E-42 | transposed | |
Cmo16g00165 | Cmo-Chr16:750132 | Cmo08g00911 | Cmo-Chr8:5934466 | 1.30E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10276 | PF01486 | K-box | 2.20E-28 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00911 | K09264 | - | csv:101219421 | 332.028 |