Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00912 ATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGCATGCAGGCAACTCTAGAGCGGTACAGAAAGCATGCAAAAACCAAAGAAGCCCTCGACCCTCCATCGGTTAATGATATCCAGTTGGAGCATCTGAATCATGAAGAAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGTTCTTGTTCCATTGATGAACTTCAGCAGGTTGAACTTCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGGAGAAACTCTTGGAAGCCGAAAATGCTAAGCTACTCGAAAAGTGGGAAAGTGAGGCAGAAGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAATGAACTATGCAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTTTCCCTTAACTGA 672 42.71 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANSSMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLGSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWESEAEGVKEVERGENLMNYAESSSPSSEVETELFIGPPETRPRTFLSLN 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5937954 5944012 - CmoCh08G009120.1 Cmo08g00912 387645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00912 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo08g00912 223 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cmo08g00912 223 PANTHER MADS BOX PROTEIN 1 213 - -
Cmo08g00912 223 Coils Coil 146 173 - -
Cmo08g00912 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo08g00912 223 Pfam K-box region 94 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo08g00912 223 PANTHER MADS-BOX PROTEIN SOC1 1 213 - -
Cmo08g00912 223 SUPERFAMILY SRF-like 3 89 IPR036879 GO:0003677|GO:0046983
Cmo08g00912 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo08g00912 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo08g00912 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo08g00912 223 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Cmo08g00912 223 MobiDBLite consensus disorder prediction 192 223 - -
Cmo08g00912 223 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo08g00912 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Cmo08g00912 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01143 Cmo08g00912 CCT
Cmo06g01143 Cmo08g00912 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01041 Cmo-Chr2:6328409 Cmo08g00912 Cmo-Chr8:5937954 5.41E-51 dispersed
Cmo02g01534 Cmo-Chr2:8913207 Cmo08g00912 Cmo-Chr8:5937954 6.79E-68 dispersed
Cmo06g01143 Cmo-Chr6:8774826 Cmo08g00912 Cmo-Chr8:5937954 5.87E-71 dispersed
Cmo08g00912 Cmo-Chr8:5937954 Cmo14g02060 Cmo-Chr14:15036993 9.92E-75 dispersed
Cmo14g00874 Cmo-Chr14:4637696 Cmo08g00912 Cmo-Chr8:5937954 2.64E-10 dispersed
Cmo15g01463 Cmo-Chr15:9931669 Cmo08g00912 Cmo-Chr8:5937954 9.74E-37 dispersed
Cmo08g00911 Cmo-Chr8:5934466 Cmo08g00912 Cmo-Chr8:5937954 5.36E-46 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10277 PF01486 K-box 8.00E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00912 - - bhj:120069607 327.791