Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00918 ATGGATGGAATTTCACCCCACAATCGCCCTCTTCCTCCTCTTTTTCTCTCCAAAGATCTCCACCTCCACCATGGGTTATTTCACCACCACCAAAACTCCGACGACGACGCCGCCGCTGGATCTAGTGGTTCTAAGAGAGATCGGGAGGAGGAAAACCCAATCACGGCTGTGGCAACGGCGGCGGACAGTAAGGAATTGTCTAATTCCTCTTCTCGACGGCCACGTGGCCGACCAGCTGGCTCCAAAAACAAGCCGAAGCCGCCTATTATTATCACTAGAGACAGCGCCAACGCTCTCAGATCCCATCTCATTGAAATCGCCTCCGGCTCCGACATCGTCGACTCTCTCACCACCTTTGCGCGGCGGCGTCAACGCGGCGTTTGTATTTTAAGCGCTACCGGAACTGTCACCAACGTCAATCTCCGGCAGCCGGCTTCTCCTGGCGCTGTCATCAATTTACATGGCAGATTTGAAATTCTCTCCCTCTCTGGCTCCTTCCTCCCACCGCCGGCTCCCCCGGCCGCCTCCGGGCTGACCGTTTATTTAGCTGGCGGGCAGGGGCAGGTGGTGGGTGGGAATGTAATCGGCCCATTTTTGTCCTCCGGTCCGGTGATTATTATGGCGGCTTCTTTTGGTAATGCGGCGTATGAACGACTCCCGATTGATGACGACGACGAGACTTCTCCGGCGGCGGAGATGGCTGGACAACCGGCGGTGACCCCACCGCCGCCGCAATTGTTGGGGGATCCTAATGGGGGATTGTTTCATGGGGTGGCGCAGAATGCTGTGAATTCTTCATGCCAATTGCCGACGGAGGCGGCGGCGGCGCTTTGGAGAGGAGGTCGACCACCGTATTGA 858 57.11 MDGISPHNRPLPPLFLSKDLHLHHGLFHHHQNSDDDAAAGSSGSKRDREEENPITAVATAADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEIASGSDIVDSLTTFARRRQRGVCILSATGTVTNVNLRQPASPGAVINLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPFLSSGPVIIMAASFGNAAYERLPIDDDDETSPAAEMAGQPAVTPPPPQLLGDPNGGLFHGVAQNAVNSSCQLPTEAAAALWRGGRPPY 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5986572 5987429 - CmoCh08G009180.1 Cmo08g00918 387651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00918 285 MobiDBLite consensus disorder prediction 221 253 - -
Cmo08g00918 285 MobiDBLite consensus disorder prediction 29 53 - -
Cmo08g00918 285 CDD DUF296 100 211 IPR005175 -
Cmo08g00918 285 MobiDBLite consensus disorder prediction 29 90 - -
Cmo08g00918 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cmo08g00918 285 Gene3D - 99 229 - -
Cmo08g00918 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 285 IPR014476 GO:0003680
Cmo08g00918 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 212 IPR005175 -
Cmo08g00918 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 7 285 - -
Cmo08g00918 285 MobiDBLite consensus disorder prediction 61 76 - -
Cmo08g00918 285 ProSiteProfiles PPC domain profile profile. 96 236 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00918 Cmo-Chr8:5986572 Cmo15g01236 Cmo-Chr15:8513916 7.19E-79 dispersed
Cmo14g02016 Cmo-Chr14:14758803 Cmo08g00918 Cmo-Chr8:5986572 2.19E-67 wgd
Cmo17g00030 Cmo-Chr17:135628 Cmo08g00918 Cmo-Chr8:5986572 6.06E-135 wgd
Cmo06g01155 Cmo-Chr6:8855557 Cmo08g00918 Cmo-Chr8:5986572 3.76E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00918 - - csv:101220133 420.239