Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00929 ATGGATGGACCAACTGGTCGTGGCAGCGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATACTTAACCGCCGGAAGATAAAAAACTTGGACATGGAAGAAAAAGTAAGGAGAGAGATTAAAATATTGAGATTGTTCATGCATCCTCACATTATACGGCTCTATGAAGTCATAGAGACCCCGACAGACATTTATGTTGTGATGGAGTACGTAAAATCTGGAGAGCTCTTTGATTATATTGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCCCGTATTTTTTTCCAACAGATAATTTCTGGTGTGGAGTACTGCCACAGGAATATGGTGGTGCACAGAGATCTTAAGCCTGAGAATTTGCTTTTGGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCTCCAGAGGTAATCTCCGGGAAATTATATGCTGGACCTGAAGTAGATGTATGGAGTTGTGGTGTTATTTTGTATGCGCTTCTATGCGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGGATCTATACTCTTCCAAGTCATTTATCGTCAGGTGCTAGAGAATTGATTCCTAGTATGCTGGTTGTTGACCCAATGAAGCGCATCACCATCCCTGAGATCCGACAGCACCCGTGGTTTCAGGCTCATCTTCCACGCTATTTAGCTGTGCCTCCACCTGATACAATGCAACAAGCCAAAAAGATTGATGAAGACATTCTTCAGGAGGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGAATTCAAAATGAGGCTACAGTTGCTTATTATTTGTTGCTGGACAACCGCTTCCGTGTTTCTAGTGGTTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCGTATGCACCCTGGTGAACCTACAAGTCCTGTTGTAGGACACCGTCATCCTGGATATATGGATTACCAAGGAATGGGATTAAGATCACAGTTTCCTGTTGAGAGAAAGTGGGCTCTGGGATTACAGTCTCGCGCTCATCCACGTGAAATTATGACCGAGGTTCTTAAAGCTCTACGTGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTACAATATGAAATGTAGGTGGTTGCCTGGAATTCCAGGCCATCATGAAGGCATGATCAACAGCCCTGTGCATAGTAATCATTACTTCGGGGACGAGTCTACCATCATTGAAAACGATGGCGTCGTTAAATCGCCTAATGTTATCAAGTTTGAAGTTCAGCTCTACAAAACGCGGGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCGTTCCTTGCACAGCTCCGAGTGCTCTAA 1545 43.43 MDGPTGRGSGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARIFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPGEPTSPVVGHRHPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINSPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6049608 6057813 - CmoCh08G009290.1 Cmo08g00929 387662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00929 514 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 291 331 IPR015940 -
Cmo08g00929 514 Pfam Kinase associated domain 1 471 513 IPR001772 -
Cmo08g00929 514 SUPERFAMILY Protein kinase-like (PK-like) 15 286 IPR011009 -
Cmo08g00929 514 SUPERFAMILY KA1-like 327 513 IPR028375 -
Cmo08g00929 514 Gene3D Transferase(Phosphotransferase) domain 1 10 348 - -
Cmo08g00929 514 Gene3D Kinase associated domain 1, KA1 394 512 - -
Cmo08g00929 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Cmo08g00929 514 PANTHER SERINE/THREONINE KINASE 8 513 - -
Cmo08g00929 514 CDD STKc_AMPK_alpha 15 270 - -
Cmo08g00929 514 CDD UBA_SnRK1_plant 292 332 - -
Cmo08g00929 514 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 513 - -
Cmo08g00929 514 Pfam UBA/TS-N domain 292 328 IPR015940 -
Cmo08g00929 514 CDD AMPKA_C 388 511 - -
Cmo08g00929 514 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Cmo08g00929 514 SUPERFAMILY UBA-like 280 329 IPR009060 GO:0005515
Cmo08g00929 514 SMART uba_6 293 330 IPR015940 -
Cmo08g00929 514 ProSiteProfiles Protein kinase domain profile. 18 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00929 514 Pfam Protein kinase domain 18 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00929 514 SMART serkin_6 18 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00929 514 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 465 513 IPR001772 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00929 Cmo-Chr8:6049608 Cmo11g01032 Cmo-Chr11:5652371 0 dispersed
Cmo11g01031 Cmo-Chr11:5646044 Cmo08g00929 Cmo-Chr8:6049608 7.25E-14 transposed
Cmo17g00038 Cmo-Chr17:184901 Cmo08g00929 Cmo-Chr8:6049608 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74537 PF00069 Pkinase 1.20E-79 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00929 K07198 - csv:101211720 1003.05