Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00933 ATGGCTGGCCTATCGCTCAAGTGCGGGGATTGTGGCGCTCTTTTGAGATCCGTAGAAGAAGCTCAAGAACACGCTGAACTCACTTCTCATTCCAACTTCTCTGAGTCCACTGAAGCTGTGCTTAATCTCATCTGCACTGCTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACTGGCCACACTGAGTTTACTGATAAGACTTTGGAGGCTGCAAAACCAATAAGCTTGGAGGCCCCGAAGGTAGCTGCGGAGTCAGAAGATGGTGGGGATGCAAGTGCTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACAAGAGTATATTGGAGGAACTTGAAGCTATGGGTTTCCCAACAGCACGAGCAACCCGTGCACTTTATTATTCTGGAAATGCAAGTCTGGAGGCTGCAGTCAATTGGGTAGTCGAACATGAGAATGATCCAGAGATAGATCAGATGCCTTTGGTTCCTAAGGATACAAAGGTCGAGGCTCCCAAGCCTGCTCTTACACCTGAGCAACTGAAAGCAAAACAACAGGAGCTAAGGGAACGAGCTCGGAAGAAAAAAGAGGAGGAAGAGAAGCTAGCAGAGAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGCAAGGAGCTCTTAGAAGCAAAAAGGATGGAGGAATTAAATGAGAGAAAAAGAATATTGGCCTTGAGGAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGAAAAAATTCGTCAAAAACTTGAAGAGGACAAGGCGGAAAGAAGACGGAGACTTGGGTTGCCAGCAGAAGATCCTTCAACTGCGAAACCTCCCGCCCCAGTTGTTGAAGAGAAAAAGCTCTCGTTGCCGGTTAGACCTGCTTCAAAAGCAGAGCAAATGAGAGAATGTTTGCGATCATTAAAGTCCAATCACAAGGAGGATGATGCTAAAGTGAAGAGGGCGTTTCAAACCCTTCTAACTTACGTGGGAAACGTGGTGAAAAATCCTGATGAAGAGAAGTTCAGAAAGATTAGACTCAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGAGGAATCGAGTTTCTAGAGCTGTGTGGGTTTGAGAAAATTGAAGGTGATGAGTTCTTGTTTTTGCCCAGAGACAAAGTTGACAGAGCAGTGCTTAATTCAGCTGGCTCTGAGCTCGACTCTGCAATTAAGAATCCCTTCTTTGGTGTTCTTTAA 1236 46.04 MAGLSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLICTACGKPCRSKTESDLHTKRTGHTEFTDKTLEAAKPISLEAPKVAAESEDGGDASASKSEEMVVPEVNKSILEELEAMGFPTARATRALYYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPALTPEQLKAKQQELRERARKKKEEEEKLAEREREKERIRIGKELLEAKRMEELNERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPAEDPSTAKPPAPVVEEKKLSLPVRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVVKNPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGDEFLFLPRDKVDRAVLNSAGSELDSAIKNPFFGVL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6070593 6079179 - CmoCh08G009330.1 Cmo08g00933 387666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00933 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Cmo08g00933 411 SUPERFAMILY UBA-like 97 164 IPR009060 GO:0005515
Cmo08g00933 411 Pfam PUB domain 318 389 IPR018997 -
Cmo08g00933 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Cmo08g00933 411 SUPERFAMILY PUG domain-like 297 407 IPR036339 -
Cmo08g00933 411 Coils Coil 181 215 - -
Cmo08g00933 411 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Cmo08g00933 411 CDD PUB_UBA_plant 305 411 - -
Cmo08g00933 411 MobiDBLite consensus disorder prediction 54 106 - -
Cmo08g00933 411 MobiDBLite consensus disorder prediction 54 74 - -
Cmo08g00933 411 SMART PGNneu 321 384 - -
Cmo08g00933 411 Gene3D - 113 157 - -
Cmo08g00933 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Cmo08g00933 411 SMART uba_6 112 150 IPR015940 -
Cmo08g00933 411 Pfam UBA/TS-N domain 112 147 IPR015940 -
Cmo08g00933 411 MobiDBLite consensus disorder prediction 253 270 - -
Cmo08g00933 411 MobiDBLite consensus disorder prediction 253 280 - -
Cmo08g00933 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Cmo08g00933 411 Gene3D - 303 401 - -
Cmo08g00933 411 Coils Coil 224 261 - -
Cmo08g00933 411 CDD UBA_PUB_plant 110 158 - -
Cmo08g00933 411 MobiDBLite consensus disorder prediction 171 208 - -
Cmo08g00933 411 MobiDBLite consensus disorder prediction 183 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00933 Cmo-Chr8:6070593 Cmo12g01011 Cmo-Chr12:9458895 2.52E-88 dispersed
Cmo08g00933 Cmo-Chr8:6070593 Cmo05g00703 Cmo-Chr5:3606682 3.61E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00933 K24348 - csv:101215434 699.508