Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00948 ATGGCTACTTTAAACTTAGGCTCCGCTTCTCACTTTGTTGATCAGCTTCAGCAACAACGCCCTGATCTCCACCTACAAACGCCGCCAAATTCCGACCATGTTACTAATCTCAACCACTACAACGGCGGTGGCTCTGGTGGCAGCAGTGGCGGTGATGTCATGGTTCGTAGGCCTAGGGGTCGCCCGGCCGGGTCGAAGAACAAACTGAAGCCGCCTGTAATCATCACGCGCGAGAGTGCTAATACACTTCGAGCTCATATCTTGGAGGTTGGTAGCGGCTGCGATGTGTTTGAGGCGATAGCCACTTATGCGCAACGGCGACAACGGGGGATCTGCGTGTTGAGTGGAAGTGGGATCGTGAATAATGTTAGCTTGCGTCAACCGACGGCAACTGGGTCGGTGTTGACGCTTCAAGGGAGGTTTGAGATTTTATCGCTATCGGGATCGTTTCTTCCACCACCAGCTCCACCTGGTGCTACTAGTCTCACGATCTTTTTAGCTGGTGGACAAGGACAGGTCGTTGGAGGGAATGTCGTGGGAGCTTTGATGGCTTCGGGGCCAGTCATCATCATAGCGTCATCATTTAGTAACGTAGCGTATGAGAGGTTGCCATTGGAGGAAGAAGAGTTGCCGATGCAGGCAGGTGGTGGAGACGGGGACGGAGGAGACGGTGGTGACGATGGTCACAACAATCCTTTTCCCGACGCATCTTCGGGTTTGCCCTTTCTTAATCTTCCTATGAACATGCCCAATCAAAATCAATTTTTCGGTTGA 774 52.2 MATLNLGSASHFVDQLQQQRPDLHLQTPPNSDHVTNLNHYNGGGSGGSSGGDVMVRRPRGRPAGSKNKLKPPVIITRESANTLRAHILEVGSGCDVFEAIATYAQRRQRGICVLSGSGIVNNVSLRQPTATGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALMASGPVIIIASSFSNVAYERLPLEEEELPMQAGGGDGDGGDGGDDGHNNPFPDASSGLPFLNLPMNMPNQNQFFG 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6171397 6172470 - CmoCh08G009480.1 Cmo08g00948 387681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00948 257 PIRSF ESCAROLA 2 255 IPR014476 GO:0003680
Cmo08g00948 257 Gene3D - 83 214 - -
Cmo08g00948 257 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Cmo08g00948 257 MobiDBLite consensus disorder prediction 211 244 - -
Cmo08g00948 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 254 IPR014476 GO:0003680
Cmo08g00948 257 MobiDBLite consensus disorder prediction 23 71 - -
Cmo08g00948 257 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
Cmo08g00948 257 MobiDBLite consensus disorder prediction 23 45 - -
Cmo08g00948 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 254 - -
Cmo08g00948 257 CDD DUF296 84 167 IPR005175 -
Cmo08g00948 257 ProSiteProfiles PPC domain profile profile. 80 216 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00948 Cmo-Chr8:6171397 Cmo19g00257 Cmo-Chr19:1873601 6.34E-90 dispersed
Cmo14g02016 Cmo-Chr14:14758803 Cmo08g00948 Cmo-Chr8:6171397 1.30E-94 wgd
Cmo14g02016 Cmo-Chr14:14758803 Cmo08g00948 Cmo-Chr8:6171397 1.30E-94 wgd
Cmo17g00057 Cmo-Chr17:290693 Cmo08g00948 Cmo-Chr8:6171397 8.04E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00948 - - csv:101203160 410.994