Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00949 ATGACGGAATTTCTTGATTTGGAAGCACAGGATGGCGTCCGGATGCCGTGGAATGTGGTGCCCGGGACGAAGCAAGAAGCTAGCAACTGCATAGTTCCAGTTTCCGCCATGTATACGCCGATCAAAGCCTTCCCGAACATGCCGATGCTACCTTACGCTCCTCTTCGATGTCGTACTTGTCGCGCTATTCTCAATCCGTTTTCTATTGTTGATTTCGCTGCGAAGATCTGGATCTGTCCGTTTTGCTTTCAGCGGAATCATTTCCCTCCTCATTACGCCTCTATTTCCGATGATAACCTTCCGGCGGAGCTATTCCCGCAGTATACTACTATTGAATACGAGTCTTCTGGGGAAACGGTGTCTTCGGTTCCTTCGGTGTTCATGTTTGTGTTGGATACTTGTATAATTGAAGAGGAGATTGCGTTTTTGAAATCTGCTTTGTCTCAGGCTGTTGATCTGCTTCCTGATAATTCTTTGGTTGGGCTCATTACATATGGTACTTTTGTTCACGTTCATGAATTGGGGTTCGGTCAGATTCCGAAGACGTTTGTGTTTAAGGGCTCCAAGGATGTGTCCAAGGACCAGCTTCTGGAGCAGATGAACTTCTTTCTCAAGAAGCCCAAGCCTCCCACTGGTGTCATTGCTGGCGCGAGAGATGGACTTTCAACTGAGAGCATTTCTCGCTTTCTGCTGCCTAAGTCCGAGTGCGAATTTGCTCTCAATTCCGTTTTGGAGGAGCTGCAGAAAGACCCTTGGGCAGTTCCAGCGGATCAGCGAGCCCCGAGGTGCACTGGCACTGCCCTGAGCATTGCCGCCAGCTTGCTTGGCGCTTGTGTTCCTGGTTCAGGAGCAAGAATCTTAGCATTTGTTGGTGGGCCATCGACTGAAGGACCGGGTGCCATTGTGTCTAAAAATTTATCTGAACCAATTCGGTCTCACAAGGACCTGGATAAAGATTCTGCCCCTCATTTTCATAAAGCTGTGAAGTTCTATGAGGGACTCTCGAAGCAGCTTGTTCATCAAGGACATGTACTTGATCTATTCGCTTGTGCTCTTGACCAGGGCGCACTCTCAGTTGAATATTTTGCTAATGCAATGGATGTTCACAGGGTCGGTATTGCTGAAATTAAAGTTGCAGTTGAAAAAACTGGAGGGCTTGTTGTGCTTGCAGAAAGTTTTGGCCACTCAGTTTTTAAGGATTCACTTAAACGTGTTTTTTCGGGTGAATATGATCTTGGTTTAGCATCAAATGGTATATTTGAGATCAATTGCTCAAAGGATATCAAAGTTCAGGGTGTTATTGGTCCTTGTGCCTCTCTTGAAAAGAAAGGTCCGTTGTGCTCAGACACTGTCATTGGTCAAGGAAATACAAGTGCATGGAAAATGTGTGGCTTTGATAAAGCAACAACTTTGAGTCTCATATTTGAAATTGTTAAAAAAGAGACCTCAGATGCTACTGTTCAATCTGCCAGCAATCAGTTTTACTTTCAATTTTTGACTTATCAAAACAGCAGTGGTCAAATGAGACTCCGTGTTACAACCCTTTCTAGGAGATGGGTTGCTGGACCTGGAAGCATACAGAAAGCTGTTTTCCACATAATGCCAATGAACTTTAAGGTCACATGCTTAACATGTACACTACTAAAACAATTGGGGCTAATTCAGATTAGTGAAAGAATCCTCCCTCAAGGAAAAAGAATGATGTACATCCGCAAATTGCAAATGAATGGGATGAACCGTGACTTGATTGCGGGGTTTGACCAAGAAGCTGCTGCTGCAGTCATGGCACGTCTAGTTTCCTTCAAGATGGAAAATGAGGAGTTCGGGCTCCATAATTCAGACTATATCACTACCTACGAGTATAAACACTTTAGCACCTGTATTGCAACTGGTATCCAGGCAGAGTTTGATCCTATAAGATGGTTGGATAAATCATTGATTCATCTTTGTTCCCGTTTTGGAGATTATCAGAAGGATACTCCATCTTCCTTCAGCTTATCTCCACGTTTTTCAATATTCCCTCAGTTTATCTTTCATTTGCGACGATCTCAGTTTGTGCAGGTTTTTAATAATAGTCCTGATGAGACTGCGTACTTCAGAATGATCCTGAACCGTGAGAATGTTGCTAATTCTGTAGTAATGATCCAACCGTCATTGATTTCTTACACATTTCATTCAGCCCCAGAACCAGTTCTTCTTGATGTAGCTGCCATTGCGGCTGACAGGATTCTCCTACTGGATGCATATTTCACTGTTGTTATCTTCCACGGGGCAACTATTGCTCAATGGAGGAAAGCTGGGTATCATAATCAGCCTGAACATCAGACATCTATTTCTCTGCTCTTCTACTTTCTCAACCCACTTAATTCTTGGAATTTCCTTCTGGCCTGGCATTTCCGCAAGAGTTTTGACAAACGGTTGTTTCTCCGTGTTGAGATCATGTTTCCTCAAAATTCTAGGTTAATAGCGTCTGCTCTAGATGATTATCCAGTAATTACCTATGTCATCAATGCCAATATGAGAAGACACATTCTCGCGTTTGCCCAGTTGCTGCAAGCTCCTCGGGACGATGTAGATGCAACAATCAAGGAAAGATTTCCAGTACCACGTTTGGTGATCTGTGATCAGCATGGTTCGCAGGCACGTTTTCTTCTGGCAAAGCTGAATCCTTCAGCCACCTATAACACTGAGTCTCCCCTTCCCGGCGGAGATATCATCTTCACCGACGATGTCAGCTTCGAAGTCTTCTTAGATCATCTGCAGAGGTTAACCGGGCCGTATGAGCTAATGAGACATGGGGATCGTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTCATTACTTGGACCATATTTGCAATTTATTTACATATACGAACAAATAAAAATTTGGAAGGTGAAAAAAAAAAGCTTTATCAAATTTTAA 2928 43.58 MTEFLDLEAQDGVRMPWNVVPGTKQEASNCIVPVSAMYTPIKAFPNMPMLPYAPLRCRTCRAILNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYESSGETVSSVPSVFMFVLDTCIIEEEIAFLKSALSQAVDLLPDNSLVGLITYGTFVHVHELGFGQIPKTFVFKGSKDVSKDQLLEQMNFFLKKPKPPTGVIAGARDGLSTESISRFLLPKSECEFALNSVLEELQKDPWAVPADQRAPRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPGAIVSKNLSEPIRSHKDLDKDSAPHFHKAVKFYEGLSKQLVHQGHVLDLFACALDQGALSVEYFANAMDVHRVGIAEIKVAVEKTGGLVVLAESFGHSVFKDSLKRVFSGEYDLGLASNGIFEINCSKDIKVQGVIGPCASLEKKGPLCSDTVIGQGNTSAWKMCGFDKATTLSLIFEIVKKETSDATVQSASNQFYFQFLTYQNSSGQMRLRVTTLSRRWVAGPGSIQKAVFHIMPMNFKVTCLTCTLLKQLGLIQISERILPQGKRMMYIRKLQMNGMNRDLIAGFDQEAAAAVMARLVSFKMENEEFGLHNSDYITTYEYKHFSTCIATGIQAEFDPIRWLDKSLIHLCSRFGDYQKDTPSSFSLSPRFSIFPQFIFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMIQPSLISYTFHSAPEPVLLDVAAIAADRILLLDAYFTVVIFHGATIAQWRKAGYHNQPEHQTSISLLFYFLNPLNSWNFLLAWHFRKSFDKRLFLRVEIMFPQNSRLIASALDDYPVITYVINANMRRHILAFAQLLQAPRDDVDATIKERFPVPRLVICDQHGSQARFLLAKLNPSATYNTESPLPGGDIIFTDDVSFEVFLDHLQRLTGPYELMRHGDRIGIGIQKKLGHSLLGPYLQFIYIYEQIKIWKVKKKSFIKF 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6175065 6187338 - CmoCh08G009490.1 Cmo08g00949 387682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00949 975 Gene3D - 8 517 - -
Cmo08g00949 975 Gene3D von Willebrand factor, type A domain 124 414 IPR036465 -
Cmo08g00949 975 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 843 923 IPR036180 -
Cmo08g00949 975 Gene3D Severin 721 786 IPR029006 -
Cmo08g00949 975 Gene3D Severin 833 910 IPR029006 -
Cmo08g00949 975 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 632 781 IPR037364 -
Cmo08g00949 975 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cmo08g00949 975 SUPERFAMILY Helical domain of Sec23/24 587 716 IPR036175 GO:0006886|GO:0006888|GO:0030127
Cmo08g00949 975 SUPERFAMILY Zn-finger domain of Sec23/24 45 116 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cmo08g00949 975 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 529 IPR037364 -
Cmo08g00949 975 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 632 781 - -
Cmo08g00949 975 SUPERFAMILY vWA-like 123 407 IPR036465 -
Cmo08g00949 975 Pfam Sec23/Sec24 helical domain 639 712 IPR006900 GO:0006886|GO:0006888|GO:0030127
Cmo08g00949 975 Gene3D - 51 110 - -
Cmo08g00949 975 Gene3D Sec23/Sec24 helical domain 575 720 - -
Cmo08g00949 975 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 529 - -
Cmo08g00949 975 Pfam Gelsolin repeat 728 776 IPR007123 -
Cmo08g00949 975 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 844 923 IPR037364 -
Cmo08g00949 975 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 575 606 IPR037364 -
Cmo08g00949 975 SUPERFAMILY beta-sandwich domain of Sec23/24 4 522 - -
Cmo08g00949 975 Pfam Sec23/Sec24 beta-sandwich domain 416 520 IPR012990 -
Cmo08g00949 975 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 575 606 - -
Cmo08g00949 975 Pfam Sec23/Sec24 trunk domain 124 406 IPR006896 GO:0006886|GO:0006888|GO:0030127
Cmo08g00949 975 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 844 923 - -
Cmo08g00949 975 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 717 780 IPR036180 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00949 K14006 SEC23; protein transport protein SEC23 - csv:101211017 1263.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00949 Cmo-Chr8:6175065 Cmo14g01562 Cmo-Chr14:12472571 8.78E-29 dispersed
Cmo08g00949 Cmo-Chr8:6175065 Cmo06g01601 Cmo-Chr6:11202420 3.38E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1024 . . . . . . . . Cmo08g00949 . Cma06g01605 . Car06g01364 . Sed02g1076 Cpe08g00118 . Bhi01g01171 Tan10g1175 Cmetu06g0798 . Hepe05g1311 . Lcy11g1275 . . . . . . . Cone14ag0547 Cone15ag0568 Cone18ag0909 Cone11ag0596 . . . Cme06g00863 . Blo07g00065 . Bda13g00305 . . . . . . . Cma08g00981 . Car08g00861 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011146 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00949 Cmo_Chr08 FPKM 81.459602 92.874649 25.941353 26.244473 295.565765 316.216644 253.706558 6.182199 4.36999 4.930925