Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00997 ATGGTAGAAGAGGAAAGAACTGAAGCAGGCTGGGATAGCAAGAAGGAGTTGACCATGACATCGACTTCTTCTGCTGGGGGGAAGCAACTGGCCGTGGTTGAAGCTCCTTCTAACTGTGTTCCATACCCGCCACCGCAAACGACGTATGAGGATCTCATAGCCGATCCCAAGCTCTTTATGGCGTCCTTGGAAAAGCTCCATTCTATTATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTGGACCTGCATCGGCTTTTCGTGGAGGTCACTGCTCGTGGTGGCCTTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAAATTTCCTTCGACAGCCACCAATGCATCTTTTGTGCTGAGGAAGTATTATCTCTCATTAATTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTGGGATGGACACCAAAAGTTTCTGATTCCTCTCCAACCCCAAGTGCAGTGCCAATTCCGACACAAGGGACGATGACCTCTATGTTGCCGCCATCCAATCGGCCAGCACCCCAGCAGCAGCCACAGACTACTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTCGGTACCACCAGCGGGAGGGTTTCCGGTGGTTGGAGTCATTGATGGAAAATTTGAAAGCGGATATCTCGTTACTGTTACTGTAGGAAATGAGAAGCTAAAAGGTGTGCTTTATATGACTCCTCCAGAGCAACCTGCTCAACAAGTGTTCCAGCCTGGTAGTGTTTTCACCAAAGATGGTACTACCTCCACTACACCAAGTGCTCAGCGCCGTCGTCGGAGGAAGAAATCCGAGATCAAACGAAGGGATCCAGCTCATCCAAAGCCGAATAGAAGTGGCTACAATTTCTTCTTCGCCGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAATGAGACTGAAAAAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAATTGAGATGGAGAATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTCATGCAGTGCCATTACAGCAGCTTCTTCCTGGGACAGACCTGAATATGGTCTATGCTGCTGACAAAAACGAAGAAACCGAGGGTGGCGAACTTCCTCATATGCCGTATAATGATACAATTTATGTTGAAGATAAGGAGGAGGAAGAAGAGGAAGAGGAGGACGACGACGATGAAGAAGAAGGTGCAGCAGCACCTCAAGGAGTTGGCAATGTGGATGTTAACGTCTTGGCTGAGGAGGAACGCTGCGAGACTAGACCAGAACCAACAGCAACAGCCATTATACAAGAGAGTAGCACGGTCAAGGACGATAAGGAAGTTTTCGCCGGGCATGCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAACACCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCGGGGATTCGATGGTAATGGTGGTGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATTCAATGGTAATGGTGGAGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGAGATTCGATGGTAATGGTGGAGGCGGAAAATGAAGAACCAGAACCAACAACAGCAGCCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGTGGCAAATGAAGAACCAGAAGCAACAACCGCAGCCATTGTAGAAGATAAGGAGGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGCGACAAATGAAGGAACAGAAGCAACAAGAACAGACATTATAGAAGACAAGGAAGTTTTTGTCGGGGATTCATTGATAATGATGGAGGCAGCAAAGGAAGAAGCAGAGCCAACAGCAACAGCCATTATAGAAGATTAA 2016 46.53 MVEEERTEAGWDSKKELTMTSTSSAGGKQLAVVEAPSNCVPYPPPQTTYEDLIADPKLFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTARGGLEKVIRERRWKEVTSVFKFPSTATNASFVLRKYYLSLIHHFEQIYFFKAVGWTPKVSDSSPTPSAVPIPTQGTMTSMLPPSNRPAPQQQPQTTATELPAVAPSSVPPAGGFPVVGVIDGKFESGYLVTVTVGNEKLKGVLYMTPPEQPAQQVFQPGSVFTKDGTTSTTPSAQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNETEKTVYQEKAMKDKERYRIEMENYREKLRTGQIISHAVPLQQLLPGTDLNMVYAADKNEETEGGELPHMPYNDTIYVEDKEEEEEEEEDDDDEEEGAAAPQGVGNVDVNVLAEEERCETRPEPTATAIIQESSTVKDDKEVFAGHAVVMVDVANEEPEPTPTAIVEDKEVFAGDSMVMVVAANEEPQPTATTIIEDKEVFAGDSMVMVEAANEEPQPTATTIIEDKEVFAGDSMVMVEAENEEPEPTTAAIIEDKEVFAGDSVVMMEVANEEPEATTAAIVEDKEVFAGDSVVMMEATNEGTEATRTDIIEDKEVFVGDSLIMMEAAKEEAEPTATAIIED 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6460455 6465617 - CmoCh08G009970.1 Cmo08g00997 387730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00997 671 MobiDBLite consensus disorder prediction 409 427 - -
Cmo08g00997 671 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 421 - -
Cmo08g00997 671 Coils Coil 407 427 - -
Cmo08g00997 671 MobiDBLite consensus disorder prediction 251 268 - -
Cmo08g00997 671 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Cmo08g00997 671 SMART bright_3 54 145 IPR001606 GO:0003677
Cmo08g00997 671 MobiDBLite consensus disorder prediction 409 435 - -
Cmo08g00997 671 MobiDBLite consensus disorder prediction 156 197 - -
Cmo08g00997 671 Pfam HMG (high mobility group) box 288 355 IPR009071 -
Cmo08g00997 671 SUPERFAMILY ARID-like 49 153 IPR036431 GO:0003677
Cmo08g00997 671 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Cmo08g00997 671 SUPERFAMILY HMG-box 281 360 IPR036910 -
Cmo08g00997 671 Gene3D High mobility group box domain 272 367 IPR036910 -
Cmo08g00997 671 MobiDBLite consensus disorder prediction 156 200 - -
Cmo08g00997 671 SMART ARID_2 50 140 - -
Cmo08g00997 671 SMART hmgende2 287 356 IPR009071 -
Cmo08g00997 671 Coils Coil 337 357 - -
Cmo08g00997 671 Gene3D - 46 148 IPR036431 GO:0003677
Cmo08g00997 671 CDD HMGB-UBF_HMG-box 288 352 - -
Cmo08g00997 671 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 421 - -
Cmo08g00997 671 MobiDBLite consensus disorder prediction 251 294 - -
Cmo08g00997 671 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Cmo08g00997 671 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 288 355 IPR009071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02054 Cmo-Chr1:14346966 Cmo08g00997 Cmo-Chr8:6460455 1.60E-88 dispersed
Cmo08g00997 Cmo-Chr8:6460455 Cmo17g00098 Cmo-Chr17:534796 0 dispersed
Cmo08g00997 Cmo-Chr8:6460455 Cmo09g00078 Cmo-Chr9:365833 7.07E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10283 PF01388 ARID 1.10E-16 CL0123 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00997 - - cmax:111494342 1110.9