Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00997 ATGGTAGAAGAGGAAAGAACTGAAGCAGGCTGGGATAGCAAGAAGGAGTTGACCATGACATCGACTTCTTCTGCTGGGGGGAAGCAACTGGCCGTGGTTGAAGCTCCTTCTAACTGTGTTCCATACCCGCCACCGCAAACGACGTATGAGGATCTCATAGCCGATCCCAAGCTCTTTATGGCGTCCTTGGAAAAGCTCCATTCTATTATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTGGACCTGCATCGGCTTTTCGTGGAGGTCACTGCTCGTGGTGGCCTTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAAATTTCCTTCGACAGCCACCAATGCATCTTTTGTGCTGAGGAAGTATTATCTCTCATTAATTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTGGGATGGACACCAAAAGTTTCTGATTCCTCTCCAACCCCAAGTGCAGTGCCAATTCCGACACAAGGGACGATGACCTCTATGTTGCCGCCATCCAATCGGCCAGCACCCCAGCAGCAGCCACAGACTACTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTCGGTACCACCAGCGGGAGGGTTTCCGGTGGTTGGAGTCATTGATGGAAAATTTGAAAGCGGATATCTCGTTACTGTTACTGTAGGAAATGAGAAGCTAAAAGGTGTGCTTTATATGACTCCTCCAGAGCAACCTGCTCAACAAGTGTTCCAGCCTGGTAGTGTTTTCACCAAAGATGGTACTACCTCCACTACACCAAGTGCTCAGCGCCGTCGTCGGAGGAAGAAATCCGAGATCAAACGAAGGGATCCAGCTCATCCAAAGCCGAATAGAAGTGGCTACAATTTCTTCTTCGCCGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAATGAGACTGAAAAAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAATTGAGATGGAGAATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTCATGCAGTGCCATTACAGCAGCTTCTTCCTGGGACAGACCTGAATATGGTCTATGCTGCTGACAAAAACGAAGAAACCGAGGGTGGCGAACTTCCTCATATGCCGTATAATGATACAATTTATGTTGAAGATAAGGAGGAGGAAGAAGAGGAAGAGGAGGACGACGACGATGAAGAAGAAGGTGCAGCAGCACCTCAAGGAGTTGGCAATGTGGATGTTAACGTCTTGGCTGAGGAGGAACGCTGCGAGACTAGACCAGAACCAACAGCAACAGCCATTATACAAGAGAGTAGCACGGTCAAGGACGATAAGGAAGTTTTCGCCGGGCATGCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAACACCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCGGGGATTCGATGGTAATGGTGGTGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATTCAATGGTAATGGTGGAGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGAGATTCGATGGTAATGGTGGAGGCGGAAAATGAAGAACCAGAACCAACAACAGCAGCCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGTGGCAAATGAAGAACCAGAAGCAACAACCGCAGCCATTGTAGAAGATAAGGAGGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGCGACAAATGAAGGAACAGAAGCAACAAGAACAGACATTATAGAAGACAAGGAAGTTTTTGTCGGGGATTCATTGATAATGATGGAGGCAGCAAAGGAAGAAGCAGAGCCAACAGCAACAGCCATTATAGAAGATTAA 2016 46.53 MVEEERTEAGWDSKKELTMTSTSSAGGKQLAVVEAPSNCVPYPPPQTTYEDLIADPKLFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTARGGLEKVIRERRWKEVTSVFKFPSTATNASFVLRKYYLSLIHHFEQIYFFKAVGWTPKVSDSSPTPSAVPIPTQGTMTSMLPPSNRPAPQQQPQTTATELPAVAPSSVPPAGGFPVVGVIDGKFESGYLVTVTVGNEKLKGVLYMTPPEQPAQQVFQPGSVFTKDGTTSTTPSAQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNETEKTVYQEKAMKDKERYRIEMENYREKLRTGQIISHAVPLQQLLPGTDLNMVYAADKNEETEGGELPHMPYNDTIYVEDKEEEEEEEEDDDDEEEGAAAPQGVGNVDVNVLAEEERCETRPEPTATAIIQESSTVKDDKEVFAGHAVVMVDVANEEPEPTPTAIVEDKEVFAGDSMVMVVAANEEPQPTATTIIEDKEVFAGDSMVMVEAANEEPQPTATTIIEDKEVFAGDSMVMVEAENEEPEPTTAAIIEDKEVFAGDSVVMMEVANEEPEATTAAIVEDKEVFAGDSVVMMEATNEGTEATRTDIIEDKEVFVGDSLIMMEAAKEEAEPTATAIIED 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6460455 6465617 - CmoCh08G009970.1 Cmo08g00997 387730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00997 671 MobiDBLite consensus disorder prediction 409 427 - -
Cmo08g00997 671 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 421 - -
Cmo08g00997 671 Coils Coil 407 427 - -
Cmo08g00997 671 MobiDBLite consensus disorder prediction 251 268 - -
Cmo08g00997 671 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Cmo08g00997 671 SMART bright_3 54 145 IPR001606 GO:0003677
Cmo08g00997 671 MobiDBLite consensus disorder prediction 409 435 - -
Cmo08g00997 671 MobiDBLite consensus disorder prediction 156 197 - -
Cmo08g00997 671 Pfam HMG (high mobility group) box 288 355 IPR009071 -
Cmo08g00997 671 SUPERFAMILY ARID-like 49 153 IPR036431 GO:0003677
Cmo08g00997 671 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Cmo08g00997 671 SUPERFAMILY HMG-box 281 360 IPR036910 -
Cmo08g00997 671 Gene3D High mobility group box domain 272 367 IPR036910 -
Cmo08g00997 671 MobiDBLite consensus disorder prediction 156 200 - -
Cmo08g00997 671 SMART ARID_2 50 140 - -
Cmo08g00997 671 SMART hmgende2 287 356 IPR009071 -
Cmo08g00997 671 Coils Coil 337 357 - -
Cmo08g00997 671 Gene3D - 46 148 IPR036431 GO:0003677
Cmo08g00997 671 CDD HMGB-UBF_HMG-box 288 352 - -
Cmo08g00997 671 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 421 - -
Cmo08g00997 671 MobiDBLite consensus disorder prediction 251 294 - -
Cmo08g00997 671 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Cmo08g00997 671 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 288 355 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00997 - - - cmax:111494342 1110.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02054 Cmo-Chr1:14346966 Cmo08g00997 Cmo-Chr8:6460455 1.60E-88 dispersed
Cmo08g00997 Cmo-Chr8:6460455 Cmo17g00098 Cmo-Chr17:534796 0 dispersed
Cmo08g00997 Cmo-Chr8:6460455 Cmo09g00078 Cmo-Chr9:365833 7.07E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00098 . 1 358 ARID Transcription Factor Family AT1G04880 56.5 7.3e-106 381.7
Cmo08g00997 . 45 384 ARID Transcription Factor Family AT1G04880 59.7 5.8e-103 372.1
Cmo06g00165 . 1576 1847 ARID Transcription Factor Family AT1G20910 59.7 1.0e-87 321.2
Cmo01g02101 . 144 452 ARID Transcription Factor Family AT1G20910 53.4 9.0e-76 281.6
Cmo09g00078 CST 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.2e-113 407.1
Cmo01g02054 CST 16 363 ARID Transcription Factor Family AT1G76110 58.4 2.5e-106 382.9
Cmo06g00165 . 1567 1876 ARID Transcription Factor Family AT1G76510 60.3 1.9e-103 373.6
Cmo01g02101 . 143 482 ARID Transcription Factor Family AT1G76510 58.8 1.5e-95 347.4
Cmo01g00019 CCT,ECH 1 771 ARID Transcription Factor Family AT3G43240 59.1 6.0e-262 901.0
Cmo14g01244 . 1 781 ARID Transcription Factor Family AT3G43240 58.2 3.6e-259 891.7
Cmo17g00636 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.6 5.1e-253 871.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10283 PF01388 ARID 1.10E-16 CL0123 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00997 Cmo_Chr08 FPKM 1.011546 0.659278 8.883871 8.395166 80.211853 71.380768 73.764397 1.17652 0.929815 1.020531