Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g01004 ATGGTCTCTCGGTCCTCATTCTTTGATGCATATTCGCCCATCAACAACCACAACCACCAGCACCATTTAGCTAACGAAGTCAATTCAGTTCTCTGCAGACGCCATTCTTCTCTTCCTTCTGCCGATTCACACTTCGACTCTGACTCTTCCGCCATGGACGCAGCAGCACCACAACTCGTCTCTTGCGGAATCGACACCATTCGCTGCCGAACCTTACCATCGCGCCTTCAGTTTCCCAAACCAATTGTCAGAACTCGCAGGCGCGCCGGTAAGGTTCTTGCGGTTGCGACTGACCCGAAATCGACGCGGAATGAGTCCAGGAATTCGTCTCCAACGAAGTCCGTCAATGGATCAGCGAGATCCCCTCCGGCTCCTAAAGCTGTTAACGGAGTTTCCACTAGAATTGGAGATGTTTCGAAGGAAATTAAAAGAGTTAGAGCCCAGATGGAAGAAAATGAAGAGTTGGCAATACTCATGAGAGGACTTCGAGGACAGAATCTAAAAGATTCCCTTTTTGCAGAGGATAACGTTGAGCTCCGCCTTGTTGAGGTAGATGAGAGCAGCGAGTTTTTGCCTTTGGCTTATGATCCTGATAGCATATCTGCATATTGGGGGAAAAGACCACAGGCTGTGGCAACACGAATTGTTCAGTTGCTTTCTGTTGCTGGAGGCTTTCTCTCGCATATTGTCTGGGACATCATAAACAAGAAAGTTAAGGAGAATGAAGTTGAAAGAGCAATTGAATTAAGGGAAATTGTGACCTCGTTGGGTCCAGCATATATTAAACTAGGACAAGCTCTGAGTATTCGACCAGATATACTGTCACCTGCTGCAATGACTGAGTTACAAAAGCTTTGTGATAAGGTTCCTTCATTTCCCGATGATGTTGCTATGAGTCTTATTGAAGAGGAACTTGGTCAACCATGGCAAAACATTTATTCGGAACTTTCTCCTTCCCCAATTGCTGCTGCTTCTTTAGGGCAGGTATACAAAGGTCGTTTGAAAGAAAACGGAGATCTGGTGGCTGTTAAAGTTCAGAGGCCTTTCGTTCTAGAGACTGTAACTATTGATTTGTTTATCATACGGAATTTGGGCTTGGTTCTTCGGAAGTTTCCTCAGATTTCTCTAGATGTGGTTGGCTTGGTAGATGAATGGGCAGCTCGCTTCTTTGAGGAGCTAGATTATGTGAATGAGGGTGAAAATGGAACACGCTTTGCTGAGATGATGAGGAAGGACCTTCCACAGGTGGTTGTTCCAAAAACATACCAAAAATATACTTCAAGGAAGGTTCTCACTACTGGATGGATAGACGGAGAGAAGCTGTCCCAAAGTACGGAAAGTGATGTTGGGGAACTTGTGAATGTGGGAGTCATATGCTACCTAAAGCAGTTACTTGACACTGGATTCTTCCATGCTGATCCTCATCCTGGGAATTTGATCCGCACTCCAGATGGAAAGTTGGCCGTACTTGACTTCGGCTTAGTCACAAAGTTAACTGATGATCAGAAGTATGGAATGATTGAAGCAATTGCACATCTCATTCATCGAGATTATTCGGCTATTGTCAAAGACTTTGTTAAGCTTGGTTTTATTCCAGAGGGTGTTAATTTGGAACCAATCTTGCCAGTCCTAGCAAAAGTTTTCGATCAGGCTCTTGAGGGTGGAGGTGCAAAGAATATCAACTTCCAGGAGCTGGCTTCAGATTTAGCTCAGATAACATTTGATTATCCATTTCGGATACCTCCATATTTTGCTCTTATAATCAGGGCAATTGGGGTTCTAGAAGGAATAGCTTTGGTGGGAAACCCTGATTTTGCCATCGTGGATGAGGCATATCCTTATATTGCACAGAGACTTCTGACTGATGAGTCCCCAAGGTTAAGGAGTGCTTTACGATACACAATCTATGGGAAATCCGGAGTATTTGATGCTGAGAGATTCATCGATGTTATGCAAGCCTTCGAGAATTTCATTACTGCAGCTAAAAGTGGGGGTGGAGAGGATTTAAGTGGAGATATGGCCGGGCTTGGTGGTCTGAAAAGTCAAACATCATCTTCCTTTCTTCAACTTCTTCCTGCTCCCCGCGAATTCGAGCAGAATCAACCTATTGAAACAAGAGCATCCTTGGCCTTTTTGCTGTCTGATAGAGGGAACTTCTTTCGGGAATTTCTTCTTGATGAGATTGTGAAGGGCATTGATGCAGTCACAAGGGAGCAGTTAGTACGTTTAATGTCAATCTTTGGACTTAGAAATGCTACACCAGTTTTTAATATGGTTCCTTCCATTGGACCATTCAAGCCTGTTGCACTTCTGCCCACAGTATCAGAAGAAGACAGAGTCATACTAAATAATGTTCAAAAGATTCTCGAGTTCTTAACGGCGGGAAGTTCAATCTCAGCAACATCTAAAGAGGGTGCGGATGTTGTTCGAGTTATTCAGGAGCTTCTTCCAGTTTTGCCAGGCATCTCCACTACAGTTCTTCCTGAGGTGCTCAGTCGATTATCTTCCCGGGTATTCGCCCGATTAATTCGTGATGCAATGTTATGA 2547 44.25 MVSRSSFFDAYSPINNHNHQHHLANEVNSVLCRRHSSLPSADSHFDSDSSAMDAAAPQLVSCGIDTIRCRTLPSRLQFPKPIVRTRRRAGKVLAVATDPKSTRNESRNSSPTKSVNGSARSPPAPKAVNGVSTRIGDVSKEIKRVRAQMEENEELAILMRGLRGQNLKDSLFAEDNVELRLVEVDESSEFLPLAYDPDSISAYWGKRPQAVATRIVQLLSVAGGFLSHIVWDIINKKVKENEVERAIELREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSFPDDVAMSLIEEELGQPWQNIYSELSPSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTIDLFIIRNLGLVLRKFPQISLDVVGLVDEWAARFFEELDYVNEGENGTRFAEMMRKDLPQVVVPKTYQKYTSRKVLTTGWIDGEKLSQSTESDVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLAVLDFGLVTKLTDDQKYGMIEAIAHLIHRDYSAIVKDFVKLGFIPEGVNLEPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGEDLSGDMAGLGGLKSQTSSSFLQLLPAPREFEQNQPIETRASLAFLLSDRGNFFREFLLDEIVKGIDAVTREQLVRLMSIFGLRNATPVFNMVPSIGPFKPVALLPTVSEEDRVILNNVQKILEFLTAGSSISATSKEGADVVRVIQELLPVLPGISTTVLPEVLSRLSSRVFARLIRDAML 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6520433 6528691 + CmoCh08G010040.1 Cmo08g01004 387737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g01004 848 MobiDBLite consensus disorder prediction 99 119 - -
Cmo08g01004 848 CDD ABC1_ADCK3-like 284 525 - -
Cmo08g01004 848 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 82 847 - -
Cmo08g01004 848 SUPERFAMILY Protein kinase-like (PK-like) 287 521 IPR011009 -
Cmo08g01004 848 ProSiteProfiles Protein kinase domain profile. 315 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g01004 848 MobiDBLite consensus disorder prediction 89 131 - -
Cmo08g01004 848 PANTHER PROTEIN KINASE-LIKE DOMAIN 82 847 - -
Cmo08g01004 848 Coils Coil 135 155 - -
Cmo08g01004 848 Pfam ABC1 atypical kinase-like domain 284 523 IPR004147 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g01004 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101212546 1431.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01435 Cmo-Chr4:7318938 Cmo08g01004 Cmo-Chr8:6520433 9.67E-87 dispersed
Cmo08g01004 Cmo-Chr8:6520433 Cmo11g01266 Cmo-Chr11:8081129 2.27E-123 dispersed
Cmo08g01004 Cmo-Chr8:6520433 Cmo20g00682 Cmo-Chr20:3345325 1.80E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g879 . Blo12g00123 Bda03g01118 . Bpe04g01062 . . . Cmo08g01004 . . . . . . . . . . . . . . . Cla06g00742 Cam06g0795 Cec06g0800 . Clacu06g0794 Cmu06g0767 Cre06g1548 . . . . . . Chy05g00545 . . . . . . . . . Sed09g0191 . . Cma08g01034 . . . . Cpe17g00245 Bhi12g01511 Tan06g2320 Cmetu05g0760 Lac12g2067 Hepe03g0344 . Lcy13g0450 . . . . . . . Lsi09g01157 . . Cme05g00693
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009075 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g01004 Cmo_Chr08 FPKM 14.736704 15.633269 13.748077 11.636591 14.018307 12.30443 14.070996 20.299812 20.174267 19.546415